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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.0
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
2.0
473
Tumor
2.0
351
Tumor
1.2
937
Tumor
1.1
385
Tumor
1.1
951
Tumor
1.1
463
Tumor
1.0
411
Tumor
1.0
661
Tumor
1.0
533
Tumor
0.9
471
Tumor
0.9
567
Tumor
0.9
883
Tumor
0.9
527
Tumor
0.9
431
Tumor
0.9
285
Tumor
0.9
443
Tumor
0.8
537
Tumor
0.8
743
Tumor
0.8
647
Tumor
0.8
331
Tumor
0.7
983
Tumor
0.7
367
Tumor
0.7
553
Tumor
0.7
231
Tumor
0.7
817
Tumor
0.7
535
Tumor
0.7
487
Tumor
0.6
497
Tumor
0.6
1013
Tumor
0.6
523
Tumor
0.6
363
Tumor
0.6
477
Tumor
0.6
724
Normal
0.6
517
Tumor
0.6
967
Tumor
0.5
963
Tumor
0.5
131
Tumor
0.5
357
Tumor
0.5
123
Tumor
0.5
925
Tumor
0.5
171
Tumor
0.5
715
Tumor
0.5
921
Tumor
0.5
387
Tumor
0.4
923
Tumor
0.4
815
Tumor
0.4
663
Tumor
0.4
211
Tumor
0.4
221
Tumor
0.4
227
Tumor
0.3
135
Tumor
0.3
341
Tumor
0.3
873
Tumor
0.3
641
Tumor
0.3
277
Tumor
0.3
571
Tumor
0.3
737
Tumor
0.3
813
Tumor
0.3
975
Tumor
0.3
545
Tumor
0.3
881
Tumor
0.3
435
Tumor
0.3
391
Tumor
0.3
483
Tumor
0.3
695
Tumor
0.2
267
Tumor
0.2
557
Tumor
0.2
393
Tumor
0.2
465
Tumor
0.2
433
Tumor
0.2
355
Tumor
0.2
957
Tumor
0.2
185
Tumor
0.2
877
Tumor
0.2
493
Tumor
0.2
137
Tumor
0.2
413
Tumor
0.1
271
Tumor
0.1
455
Tumor
0.1
525
Tumor
0.1
635
Tumor
0.1
445
Tumor
0.1
467
Tumor
0.1
415
Tumor
0.1
977
Tumor
0.1
713
Tumor
0.1
697
Tumor
0.1
953
Tumor
0.1
191
Tumor
0.1
395
Tumor
0.1
851
Tumor
0.0
313
Tumor
0.0
361
Tumor
0.0
261
Tumor
0.0
283
Tumor
0.0
161
Tumor
0.0
671
Tumor
0.0
223
Tumor
0.0
147
Tumor
0.0
427
Tumor
0.0
513
Tumor
0.0
327
Tumor
0.0
1027
Tumor
0.0
112
Tumor
0.0
617
Tumor
-0.1
814
Normal
-0.1
425
Tumor
-0.1
257
Tumor
-0.1
857
Tumor
-0.1
563
Tumor
-0.1
297
Tumor
-0.1
1021
Tumor
-0.1
615
Tumor
-0.1
685
Tumor
-0.1
554
Normal
-0.1
1025
Tumor
-0.1
421
Tumor
-0.2
573
Tumor
-0.2
187
Tumor
-0.2
353
Tumor
-0.2
145
Tumor
-0.2
375
Tumor
-0.2
141
Tumor
-0.2
451
Tumor
-0.2
195
Tumor
-0.2
865
Tumor
-0.2
861
Tumor
-0.2
444
Normal
-0.2
311
Tumor
-0.2
665
Tumor
-0.2
224
Normal
-0.2
217
Tumor
-0.3
745
Tumor
-0.3
518
Normal
-0.3
474
Normal
-0.3
125
Tumor
-0.3
284
Normal
-0.3
446
Normal
-0.3
727
Tumor
-0.3
461
Tumor
-0.3
127
Tumor
-0.3
1043
Tumor
-0.3
481
Tumor
-0.3
917
Tumor
-0.3
534
Normal
-0.3
432
Normal
-0.3
744
Normal
-0.3
966
Normal
-0.3
1031
Tumor
-0.3
642
Normal
-0.4
213
Tumor
-0.4
823
Tumor
-0.4
618
Normal
-0.4
478
Normal
-0.4
723
Tumor
-0.4
488
Normal
-0.4
1016
Normal
-0.4
436
Normal
-0.4
564
Normal
-0.4
546
Normal
-0.4
662
Normal
-0.4
722
Normal
-0.4
272
Normal
-0.4
943
Tumor
-0.4
491
Tumor
-0.4
568
Normal
-0.4
1015
Tumor
-0.4
286
Normal
-0.4
356
Normal
-0.4
462
Normal
-0.4
738
Normal
-0.4
472
Normal
-0.4
536
Normal
-0.4
484
Normal
-0.4
915
Tumor
-0.4
494
Normal
-0.4
528
Normal
-0.4
538
Normal
-0.4
867
Tumor
-0.4
524
Normal
-0.4
447
Tumor
-0.5
696
Normal
-0.5
863
Tumor
-0.5
186
Normal
-0.5
816
Normal
-0.5
574
Normal
-0.5
482
Normal
-0.5
627
Tumor
-0.5
196
Normal
-0.5
616
Normal
-0.5
516
Normal
-0.5
572
Normal
-0.5
741
Tumor
-0.5
228
Normal
-0.5
777
Tumor
-0.5
558
Normal
-0.5
258
Normal
-0.5
636
Normal
-0.5
526
Normal
-0.5
434
Normal
-0.5
714
Normal
-0.5
698
Normal
-0.5
882
Normal
-0.5
328
Normal
-0.5
1028
Normal
-0.5
172
Normal
-0.5
913
Tumor
-0.5
212
Normal
-0.5
874
Normal
-0.5
142
Normal
-0.5
188
Normal
-0.5
884
Normal
-0.5
416
Normal
-0.5
1045
Tumor
-0.5
342
Normal
-0.6
515
Tumor
-0.6
352
Normal
-0.6
136
Normal
-0.6
954
Normal
-0.6
466
Normal
-0.6
786
Normal
-0.6
492
Normal
-0.6
364
Normal
-0.6
818
Normal
-0.6
964
Normal
-0.6
982
Normal
-0.6
412
Normal
-0.6
1041
Tumor
-0.6
628
Normal
-0.6
672
Normal
-0.6
824
Normal
-0.6
938
Normal
-0.6
343
Tumor
-0.6
192
Normal
-0.6
148
Normal
-0.6
955
Tumor
-0.6
358
Normal
-0.6
365
Tumor
-0.6
976
Normal
-0.6
858
Normal
-0.6
464
Normal
-0.6
1044
Normal
-0.6
354
Normal
-0.6
423
Tumor
-0.7
756
Normal
-0.7
878
Normal
-0.7
298
Normal
-0.7
268
Normal
-0.7
728
Normal
-0.7
113
Tumor
-0.7
376
Normal
-0.7
944
Normal
-0.7
514
Normal
-0.7
262
Normal
-0.7
1026
Normal
-0.7
383
Tumor
-0.7
1046
Normal
-0.7
1042
Normal
-0.7
918
Normal
-0.7
138
Normal
-0.7
866
Normal
-0.7
864
Normal
-0.7
452
Normal
-0.7
721
Tumor
-0.7
742
Normal
-0.7
468
Normal
-0.7
162
Normal
-0.7
984
Normal
-0.7
958
Normal
-0.7
922
Normal
-0.7
344
Normal
-0.8
456
Normal
-0.8
686
Normal
-0.8
448
Normal
-0.8
222
Normal
-0.8
981
Tumor
-0.8
1014
Normal
-0.8
214
Normal
-0.8
716
Normal
-0.8
956
Normal
-0.8
232
Normal
-0.8
914
Normal
-0.8
368
Normal
-0.8
218
Normal
-0.8
362
Normal
-0.8
498
Normal
-0.8
755
Tumor
-0.8
132
Normal
-0.8
664
Normal
-0.8
312
Normal
-0.8
366
Normal
-0.9
278
Normal
-0.9
978
Normal
-0.9
392
Normal
-0.9
952
Normal
-0.9
852
Normal
-0.9
862
Normal
-0.9
911
Tumor
-0.9
926
Normal
-0.9
384
Normal
-0.9
868
Normal
-0.9
124
Normal
-0.9
785
Tumor
-0.9
968
Normal
-0.9
396
Normal
-0.9
648
Normal
-0.9
146
Normal
-0.9
666
Normal
-0.9
924
Normal
-1.0
916
Normal
-1.0
778
Normal
-1.0
386
Normal
-1.0
1032
Normal
-1.0
332
Normal
-1.0
314
Normal
-1.0
114
Normal
-1.0
126
Normal
-1.1
746
Normal
-1.1
111
Normal
-1.1
912
Normal
-1.1
388
Normal
-1.1
128
Normal
-1.1
422
Normal
-1.2
1022
Normal
-1.2
428
Normal
-1.2
426
Normal
-1.2
394
Normal
-1.2
424
Normal
-1.3
414
Normal
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
