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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
399.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
282.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
194.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
190.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
165.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
164.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
144.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
139.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
137.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
136.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
131.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
126.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
125.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
122.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
121.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
114.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
110.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
110.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
107.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
104.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
104.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
103.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
103.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
101.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
100.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
99.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
97.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
97.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
94.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
92.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
91.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
89.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
87.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
87.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
85.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
85.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
83.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
81.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
78.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
77.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
76.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
76.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
76.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
75.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
75.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
74.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
73.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
73.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
72.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
70.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
69.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
69.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
69.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
68.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
68.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
63.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
63.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
63.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
61.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
61.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
60.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
60.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
59.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
58.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
58.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
57.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
57.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
57.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
57.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
57.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
57.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
57.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
56.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
55.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
55.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
55.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
55.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
54.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
54.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
52.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
50.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
50.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
49.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
49.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
48.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
48.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
47.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
46.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
46.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
46.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
45.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
45.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
45.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
43.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
43.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
43.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
41.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
41.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
40.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
38.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
36.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
126.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
82.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
64.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
57.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
51.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
47.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
40.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.0
261
Tumor
0.9
981
Tumor
0.9
1041
Tumor
0.9
744
Normal
0.9
554
Normal
0.8
952
Normal
0.7
124
Normal
0.7
1028
Normal
0.7
465
Tumor
0.7
114
Normal
0.7
922
Normal
0.7
298
Normal
0.7
636
Normal
0.7
428
Normal
0.7
955
Tumor
0.6
462
Normal
0.6
785
Tumor
0.6
861
Tumor
0.6
642
Normal
0.6
368
Normal
0.6
148
Normal
0.6
862
Normal
0.6
484
Normal
0.6
451
Tumor
0.6
414
Normal
0.6
353
Tumor
0.6
878
Normal
0.6
356
Normal
0.5
513
Tumor
0.5
968
Normal
0.5
984
Normal
0.5
696
Normal
0.5
494
Normal
0.5
395
Tumor
0.5
686
Normal
0.5
1032
Normal
0.5
618
Normal
0.5
915
Tumor
0.5
488
Normal
0.5
514
Normal
0.5
162
Normal
0.4
867
Tumor
0.4
466
Normal
0.4
882
Normal
0.4
354
Normal
0.4
944
Normal
0.4
858
Normal
0.4
778
Normal
0.4
464
Normal
0.4
574
Normal
0.4
866
Normal
0.4
648
Normal
0.4
396
Normal
0.4
824
Normal
0.4
212
Normal
0.4
132
Normal
0.4
546
Normal
0.4
492
Normal
0.4
964
Normal
0.4
388
Normal
0.4
436
Normal
0.4
482
Normal
0.3
222
Normal
0.3
868
Normal
0.3
384
Normal
0.3
786
Normal
0.3
394
Normal
0.3
572
Normal
0.3
1014
Normal
0.3
864
Normal
0.3
285
Tumor
0.3
852
Normal
0.3
196
Normal
0.3
918
Normal
0.3
568
Normal
0.3
865
Tumor
0.3
232
Normal
0.3
111
Normal
0.3
528
Normal
0.3
426
Normal
0.3
344
Normal
0.3
481
Tumor
0.3
195
Tumor
0.3
456
Normal
0.3
172
Normal
0.2
416
Normal
0.2
722
Normal
0.2
1046
Normal
0.2
161
Tumor
0.2
376
Normal
0.2
664
Normal
0.2
432
Normal
0.2
463
Tumor
0.2
1026
Normal
0.2
672
Normal
0.2
498
Normal
0.2
188
Normal
0.2
818
Normal
0.2
147
Tumor
0.2
728
Normal
0.2
113
Tumor
0.2
545
Tumor
0.2
314
Normal
0.2
284
Normal
0.2
141
Tumor
0.2
452
Normal
0.1
483
Tumor
0.1
487
Tumor
0.1
1042
Normal
0.1
558
Normal
0.1
355
Tumor
0.1
444
Normal
0.1
422
Normal
0.1
755
Tumor
0.1
461
Tumor
0.1
564
Normal
0.1
911
Tumor
0.1
746
Normal
0.1
662
Normal
0.1
358
Normal
0.1
415
Tumor
0.1
951
Tumor
0.1
412
Normal
0.1
923
Tumor
0.1
816
Normal
0.1
364
Normal
0.1
228
Normal
0.1
472
Normal
0.1
478
Normal
0.1
716
Normal
0.1
938
Normal
0.1
1013
Tumor
0.1
883
Tumor
0.1
331
Tumor
0.1
214
Normal
0.1
857
Tumor
0.1
943
Tumor
0.1
666
Normal
0.1
142
Normal
0.1
375
Tumor
0.1
126
Normal
0.1
278
Normal
0.1
1025
Tumor
0.1
1016
Normal
0.1
468
Normal
0.1
516
Normal
0.0
617
Tumor
0.0
823
Tumor
0.0
136
Normal
0.0
958
Normal
0.0
277
Tumor
0.0
553
Tumor
0.0
491
Tumor
0.0
698
Normal
0.0
524
Normal
0.0
956
Normal
0.0
431
Tumor
0.0
474
Normal
0.0
523
Tumor
0.0
954
Normal
0.0
714
Normal
0.0
272
Normal
0.0
884
Normal
0.0
328
Normal
0.0
926
Normal
0.0
627
Tumor
0.0
362
Normal
0.0
913
Tumor
0.0
413
Tumor
0.0
756
Normal
0.0
137
Tumor
0.0
536
Normal
0.0
815
Tumor
0.0
327
Tumor
0.0
663
Tumor
0.0
976
Normal
0.0
534
Normal
0.0
455
Tumor
0.0
982
Normal
0.0
128
Normal
-0.1
423
Tumor
-0.1
963
Tumor
-0.1
363
Tumor
-0.1
187
Tumor
-0.1
697
Tumor
-0.1
445
Tumor
-0.1
211
Tumor
-0.1
526
Normal
-0.1
518
Normal
-0.1
332
Normal
-0.1
966
Normal
-0.1
916
Normal
-0.1
967
Tumor
-0.1
392
Normal
-0.1
738
Normal
-0.1
1045
Tumor
-0.1
881
Tumor
-0.1
1027
Tumor
-0.1
352
Normal
-0.1
424
Normal
-0.1
742
Normal
-0.1
978
Normal
-0.1
557
Tumor
-0.1
383
Tumor
-0.1
312
Normal
-0.1
186
Normal
-0.1
912
Normal
-0.1
527
Tumor
-0.1
131
Tumor
-0.1
515
Tumor
-0.1
628
Normal
-0.1
467
Tumor
-0.1
434
Normal
-0.2
616
Normal
-0.2
1015
Tumor
-0.2
721
Tumor
-0.2
112
Tumor
-0.2
863
Tumor
-0.2
191
Tumor
-0.2
262
Normal
-0.2
1031
Tumor
-0.2
446
Normal
-0.2
365
Tumor
-0.2
443
Tumor
-0.2
138
Normal
-0.2
1022
Normal
-0.2
924
Normal
-0.2
665
Tumor
-0.2
427
Tumor
-0.2
218
Normal
-0.2
297
Tumor
-0.2
473
Tumor
-0.2
814
Normal
-0.2
221
Tumor
-0.2
563
Tumor
-0.2
873
Tumor
-0.2
366
Normal
-0.2
367
Tumor
-0.2
917
Tumor
-0.2
953
Tumor
-0.2
977
Tumor
-0.2
965
Tumor
-0.2
937
Tumor
-0.3
1044
Normal
-0.3
267
Tumor
-0.3
135
Tumor
-0.3
185
Tumor
-0.3
538
Normal
-0.3
877
Tumor
-0.3
925
Tumor
-0.3
741
Tumor
-0.3
258
Normal
-0.3
125
Tumor
-0.3
571
Tumor
-0.3
715
Tumor
-0.3
497
Tumor
-0.3
342
Normal
-0.3
777
Tumor
-0.3
471
Tumor
-0.3
851
Tumor
-0.3
231
Tumor
-0.3
286
Normal
-0.3
921
Tumor
-0.3
448
Normal
-0.3
477
Tumor
-0.3
145
Tumor
-0.3
357
Tumor
-0.4
517
Tumor
-0.4
647
Tumor
-0.4
724
Normal
-0.4
1043
Tumor
-0.4
737
Tumor
-0.4
361
Tumor
-0.4
268
Normal
-0.4
914
Normal
-0.4
192
Normal
-0.4
313
Tumor
-0.4
641
Tumor
-0.4
813
Tumor
-0.4
535
Tumor
-0.4
386
Normal
-0.4
213
Tumor
-0.4
615
Tumor
-0.4
695
Tumor
-0.4
1021
Tumor
-0.4
351
Tumor
-0.4
217
Tumor
-0.4
874
Normal
-0.4
983
Tumor
-0.4
411
Tumor
-0.4
224
Normal
-0.5
723
Tumor
-0.5
146
Normal
-0.5
713
Tumor
-0.5
433
Tumor
-0.5
567
Tumor
-0.5
447
Tumor
-0.5
283
Tumor
-0.5
391
Tumor
-0.5
743
Tumor
-0.5
421
Tumor
-0.6
525
Tumor
-0.6
123
Tumor
-0.6
257
Tumor
-0.6
393
Tumor
-0.6
271
Tumor
-0.6
745
Tumor
-0.7
573
Tumor
-0.7
385
Tumor
-0.7
671
Tumor
-0.7
387
Tumor
-0.7
661
Tumor
-0.7
957
Tumor
-0.7
537
Tumor
-0.7
227
Tumor
-0.8
435
Tumor
-0.8
223
Tumor
-0.8
127
Tumor
-0.8
171
Tumor
-0.8
311
Tumor
-0.8
493
Tumor
-0.8
975
Tumor
-0.9
817
Tumor
-0.9
343
Tumor
-0.9
635
Tumor
-0.9
341
Tumor
-0.9
727
Tumor
-0.9
533
Tumor
-1.0
425
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
