MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.2 nTPM
HPA Brain:38.7 nTPM
GTEx:2.2 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:43.4 nTPM
Mouse:13.1 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
2219 Male, age 76, both hemispheres 50.1
1827 Male, age 72, unknown 37.1
1833 Male, age 53, unknown 36.2
1870 Female, age 42, unknown 35.8
1830 Male, age 51, unknown 35.6
2666 Male, age 74, left hemisphere 34.7
2828 Female, age 72, unknown 34.5
2411 Female, age 72, unknown 34.2
2019 Male, age 18, unknown 32.7
2586 Male, age 75, left hemisphere 30.0
Dorsal raphe nucleus
nTPM: 33.1
2016 Female, age 72, unknown 34.6
2047 Male, age 72, unknown 33.9
1828 Male, age 53, unknown 33.5
2750 Male, age 76, both hemispheres 33.2
2298 Female, age 72, unknown 30.4
Inferior colliculus
nTPM: 38.4
1848 Female, age 42, unknown 39.8
2849 Male, age 72, unknown 39.5
1890 Male, age 53, unknown 37.3
2097 Female, age 72, unknown 37.1
Median raphe nucleus
nTPM: 38.7
2220 Male, age 76, midline 38.7
Periaquaductal grey, anterior
nTPM: 35.1
1947 Male, age 18, unknown 37.5
2502 Female, age 75, unknown 34.8
1795 Male, age 51, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 38.5
2850 Male, age 76, both hemispheres 44.1
1840 Male, age 53, unknown 38.7
1831 Male, age 72, unknown 35.6
2464 Female, age 72, unknown 35.4
Periaquaductal grey, lateral
nTPM: 35.9
2140 Male, age 76, both hemispheres 40.1
2053 Male, age 18, unknown 36.9
2272 Male, age 74, both hemispheres 30.8
Pretectal area
nTPM: 35.8
1816 Male, age 51, unknown 39.9
1944 Female, age 72, unknown 39.0
1815 Male, age 53, unknown 37.3
1817 Female, age 42, unknown 37.2
2007 Male, age 72, unknown 35.5
2316 Male, age 76, right hemisphere 35.2
2825 Male, age 18, unknown 34.9
2667 Female, age 75, unknown 34.1
2224 Female, age 72, unknown 33.7
2273 Male, age 74, both hemispheres 33.7
2407 Male, age 75, both hemispheres 33.7
Red nucleus
nTPM: 33.5
2503 Female, age 72, unknown 36.5
1865 Male, age 51, unknown 35.1
1821 Female, age 72, unknown 34.9
1954 Female, age 42, unknown 34.7
2725 Female, age 75, unknown 34.5
2588 Male, age 74, left hemisphere 33.9
1904 Male, age 53, unknown 33.1
2227 Male, age 72, unknown 32.0
2769 Male, age 72, unknown 31.9
2584 Male, age 75, left hemisphere 31.8
2785 Male, age 18, unknown 31.8
2823 Male, age 76, right hemisphere 31.3
Substantia nigra
nTPM: 32.8
1889 Female, age 72, unknown 36.2
2699 Male, age 18, unknown 34.4
2665 Male, age 74, both hemispheres 34.3
2590 Female, age 75, unknown 34.1
2241 Male, age 72, unknown 32.9
2409 Female, age 72, unknown 32.9
2583 Male, age 75, right hemisphere 32.1
1941 Male, age 53, unknown 31.0
1851 Male, age 51, unknown 30.1
1916 Female, age 42, unknown 29.6
Superior colliculus
nTPM: 35.9
1913 Female, age 42, unknown 39.2
1995 Male, age 72, unknown 38.7
2087 Female, age 72, unknown 37.2
1839 Male, age 51, unknown 36.8
1796 Male, age 53, unknown 36.3
2261 Male, age 18, unknown 36.3
2668 Female, age 75, unknown 35.1
2587 Male, age 74, left hemisphere 34.8
1895 Male, age 76, right hemisphere 33.9
2664 Male, age 75, both hemispheres 30.5
Ventral tegmental area
nTPM: 31.4
2410 Female, age 72, unknown 33.2
2223 Female, age 72, unknown 32.9
2021 Male, age 53, unknown 31.4
2218 Male, age 76, both hemispheres 31.1
1942 Male, age 51, unknown 30.3
1915 Female, age 42, unknown 29.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.2
Samples: 139

Max nTPM: 5.4
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 2.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 5.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 5.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 4.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 4.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 3.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 3.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 3.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 3.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 43.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.6
Samples: 4

Max nTPM: 43.0
Min nTPM: 33.6
Sample A Female 33.6
Sample B Female 40.5
Sample C Male 37.4
Sample D Male 43.0
Midbrain
nTPM: 43.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 40.2
Sample A Female 46.1
Sample B Female 42.7
Sample C Male 40.2
Sample D Male 44.6
Periaqueductal gray
nTPM: 40.8
Samples: 3

Max nTPM: 43.3
Min nTPM: 37.6
Sample B Female 41.4
Sample C Male 37.6
Sample D Male 43.3
Superior colliculi
nTPM: 38.9
Samples: 4

Max nTPM: 41.6
Min nTPM: 34.4
Sample A Female 34.4
Sample B Female 38.6
Sample C Male 41.6
Sample D Male 41.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.4
Sample A Male 11.4
Sample B Male 14.1
Sample C Female 14.4
Sample D Female 12.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
69289261 Antisense, RP_050407_02_H02, Mouse strain C57BL/6J (56 days, male) 3.1

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