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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIH is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
85.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
71.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
66.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
63.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
60.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
56.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
43.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
41.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
38.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
36.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
33.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
25.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIH is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.6
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.9
647
Tumor
0.8
957
Tumor
0.8
545
Tumor
0.6
131
Tumor
0.6
431
Tumor
0.6
1013
Tumor
0.6
777
Tumor
0.6
865
Tumor
0.6
277
Tumor
0.6
523
Tumor
0.6
951
Tumor
0.5
425
Tumor
0.5
411
Tumor
0.5
123
Tumor
0.5
977
Tumor
0.5
537
Tumor
0.4
211
Tumor
0.4
817
Tumor
0.4
743
Tumor
0.4
663
Tumor
0.4
1021
Tumor
0.4
427
Tumor
0.4
527
Tumor
0.4
341
Tumor
0.4
487
Tumor
0.4
515
Tumor
0.4
283
Tumor
0.4
331
Tumor
0.4
661
Tumor
0.4
355
Tumor
0.4
695
Tumor
0.4
724
Normal
0.3
573
Tumor
0.3
737
Tumor
0.3
351
Tumor
0.3
861
Tumor
0.3
433
Tumor
0.3
465
Tumor
0.3
813
Tumor
0.3
161
Tumor
0.3
467
Tumor
0.3
497
Tumor
0.3
983
Tumor
0.3
383
Tumor
0.3
473
Tumor
0.3
231
Tumor
0.2
863
Tumor
0.2
271
Tumor
0.2
741
Tumor
0.2
513
Tumor
0.2
367
Tumor
0.2
943
Tumor
0.2
285
Tumor
0.2
313
Tumor
0.2
477
Tumor
0.2
563
Tumor
0.2
785
Tumor
0.2
921
Tumor
0.2
925
Tumor
0.2
1015
Tumor
0.2
311
Tumor
0.2
112
Tumor
0.2
517
Tumor
0.2
963
Tumor
0.2
213
Tumor
0.2
491
Tumor
0.2
435
Tumor
0.2
857
Tumor
0.2
141
Tumor
0.2
463
Tumor
0.2
227
Tumor
0.2
1031
Tumor
0.2
221
Tumor
0.2
413
Tumor
0.2
615
Tumor
0.2
443
Tumor
0.2
447
Tumor
0.2
953
Tumor
0.2
685
Tumor
0.1
867
Tumor
0.1
567
Tumor
0.1
877
Tumor
0.1
814
Normal
0.1
387
Tumor
0.1
1025
Tumor
0.1
911
Tumor
0.1
975
Tumor
0.1
353
Tumor
0.1
553
Tumor
0.1
721
Tumor
0.1
525
Tumor
0.1
1043
Tumor
0.1
571
Tumor
0.1
415
Tumor
0.1
375
Tumor
0.1
223
Tumor
0.1
755
Tumor
0.1
483
Tumor
0.1
574
Normal
0.1
923
Tumor
0.1
1045
Tumor
0.1
493
Tumor
0.1
937
Tumor
0.1
881
Tumor
0.1
482
Normal
0.0
538
Normal
0.0
873
Tumor
0.0
535
Tumor
0.0
267
Tumor
0.0
445
Tumor
0.0
955
Tumor
0.0
884
Normal
0.0
967
Tumor
0.0
823
Tumor
0.0
391
Tumor
0.0
478
Normal
0.0
984
Normal
0.0
533
Tumor
0.0
627
Tumor
0.0
455
Tumor
0.0
481
Tumor
0.0
386
Normal
0.0
715
Tumor
0.0
966
Normal
0.0
958
Normal
0.0
171
Tumor
0.0
976
Normal
0.0
297
Tumor
0.0
268
Normal
0.0
393
Tumor
0.0
394
Normal
0.0
492
Normal
0.0
125
Tumor
0.0
738
Normal
0.0
327
Tumor
0.0
388
Normal
0.0
212
Normal
0.0
662
Normal
0.0
938
Normal
0.0
686
Normal
0.0
444
Normal
0.0
498
Normal
0.0
423
Tumor
0.0
883
Tumor
0.0
357
Tumor
0.0
924
Normal
0.0
917
Tumor
0.0
851
Tumor
0.0
135
Tumor
0.0
392
Normal
0.0
468
Normal
0.0
516
Normal
0.0
944
Normal
0.0
815
Tumor
0.0
858
Normal
0.0
916
Normal
0.0
617
Tumor
0.0
385
Tumor
0.0
745
Tumor
0.0
464
Normal
0.0
396
Normal
0.0
1027
Tumor
0.0
824
Normal
0.0
954
Normal
0.0
434
Normal
0.0
191
Tumor
0.0
147
Tumor
0.0
257
Tumor
0.0
915
Tumor
0.0
113
Tumor
-0.1
727
Tumor
-0.1
536
Normal
-0.1
572
Normal
-0.1
744
Normal
-0.1
451
Tumor
-0.1
713
Tumor
-0.1
978
Normal
-0.1
546
Normal
-0.1
312
Normal
-0.1
913
Tumor
-0.1
818
Normal
-0.1
261
Tumor
-0.1
461
Tumor
-0.1
488
Normal
-0.1
524
Normal
-0.1
696
Normal
-0.1
514
Normal
-0.1
568
Normal
-0.1
462
Normal
-0.1
723
Tumor
-0.1
852
Normal
-0.1
395
Tumor
-0.1
187
Tumor
-0.1
1041
Tumor
-0.1
878
Normal
-0.1
472
Normal
-0.1
956
Normal
-0.1
466
Normal
-0.1
716
Normal
-0.1
665
Tumor
-0.1
185
Tumor
-0.1
424
Normal
-0.1
648
Normal
-0.1
328
Normal
-0.1
145
Tumor
-0.1
484
Normal
-0.1
471
Tumor
-0.1
981
Tumor
-0.1
224
Normal
-0.1
365
Tumor
-0.1
952
Normal
-0.1
343
Tumor
-0.1
912
Normal
-0.1
1044
Normal
-0.1
882
Normal
-0.1
628
Normal
-0.1
376
Normal
-0.1
272
Normal
-0.1
432
Normal
-0.1
922
Normal
-0.1
414
Normal
-0.1
284
Normal
-0.1
146
Normal
-0.1
127
Tumor
-0.1
672
Normal
-0.1
558
Normal
-0.1
1042
Normal
-0.1
534
Normal
-0.1
137
Tumor
-0.1
342
Normal
-0.1
126
Normal
-0.1
421
Tumor
-0.1
192
Normal
-0.1
344
Normal
-0.1
664
Normal
-0.1
494
Normal
-0.1
816
Normal
-0.1
518
Normal
-0.1
964
Normal
-0.2
778
Normal
-0.2
456
Normal
-0.2
528
Normal
-0.2
866
Normal
-0.2
352
Normal
-0.2
756
Normal
-0.2
436
Normal
-0.2
557
Tumor
-0.2
1022
Normal
-0.2
362
Normal
-0.2
666
Normal
-0.2
364
Normal
-0.2
722
Normal
-0.2
786
Normal
-0.2
714
Normal
-0.2
416
Normal
-0.2
278
Normal
-0.2
874
Normal
-0.2
412
Normal
-0.2
926
Normal
-0.2
358
Normal
-0.2
354
Normal
-0.2
384
Normal
-0.2
1046
Normal
-0.2
422
Normal
-0.2
142
Normal
-0.2
918
Normal
-0.2
968
Normal
-0.2
1016
Normal
-0.2
446
Normal
-0.2
746
Normal
-0.2
332
Normal
-0.2
554
Normal
-0.2
474
Normal
-0.2
526
Normal
-0.2
642
Normal
-0.2
1014
Normal
-0.2
641
Tumor
-0.2
742
Normal
-0.2
914
Normal
-0.2
862
Normal
-0.2
728
Normal
-0.2
636
Normal
-0.2
368
Normal
-0.2
448
Normal
-0.2
286
Normal
-0.2
864
Normal
-0.2
1032
Normal
-0.2
635
Tumor
-0.2
428
Normal
-0.2
262
Normal
-0.2
361
Tumor
-0.2
616
Normal
-0.2
1026
Normal
-0.2
258
Normal
-0.2
452
Normal
-0.2
697
Tumor
-0.2
363
Tumor
-0.2
356
Normal
-0.2
868
Normal
-0.2
982
Normal
-0.3
426
Normal
-0.3
698
Normal
-0.3
618
Normal
-0.3
124
Normal
-0.3
298
Normal
-0.3
232
Normal
-0.3
1028
Normal
-0.3
564
Normal
-0.3
114
Normal
-0.3
228
Normal
-0.3
111
Normal
-0.3
188
Normal
-0.3
366
Normal
-0.3
128
Normal
-0.3
138
Normal
-0.3
671
Tumor
-0.4
314
Normal
-0.4
195
Tumor
-0.4
217
Tumor
-0.4
196
Normal
-0.4
162
Normal
-0.4
148
Normal
-0.5
214
Normal
-0.5
136
Normal
-0.5
132
Normal
-0.5
172
Normal
-0.6
186
Normal
-0.6
218
Normal
-0.7
222
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
