MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.4 nTPM
HPA Brain:14.7 nTPM
GTEx:17.4 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:30.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
1827 Male, age 72, unknown 15.8
1830 Male, age 51, unknown 15.3
1870 Female, age 42, unknown 15.2
1833 Male, age 53, unknown 14.2
2666 Male, age 74, left hemisphere 14.2
2219 Male, age 76, both hemispheres 13.9
2019 Male, age 18, unknown 13.1
2411 Female, age 72, unknown 13.0
2828 Female, age 72, unknown 12.0
2586 Male, age 75, left hemisphere 8.3
Dorsal raphe nucleus
nTPM: 13.7
2750 Male, age 76, both hemispheres 15.8
2298 Female, age 72, unknown 15.7
1828 Male, age 53, unknown 13.5
2047 Male, age 72, unknown 12.5
2016 Female, age 72, unknown 11.2
Inferior colliculus
nTPM: 13.8
2849 Male, age 72, unknown 15.8
1848 Female, age 42, unknown 13.5
1890 Male, age 53, unknown 13.2
2097 Female, age 72, unknown 12.9
Median raphe nucleus
nTPM: 12.2
2220 Male, age 76, midline 12.2
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 13.4
1795 Male, age 51, unknown 11.9
2502 Female, age 75, unknown 9.3
Periaquaductal grey, dorsal
nTPM: 12.4
2850 Male, age 76, both hemispheres 13.4
1840 Male, age 53, unknown 13.0
2464 Female, age 72, unknown 12.4
1831 Male, age 72, unknown 10.7
Periaquaductal grey, lateral
nTPM: 13.9
2272 Male, age 74, both hemispheres 15.6
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 11.3
Pretectal area
nTPM: 14.7
2273 Male, age 74, both hemispheres 17.5
2667 Female, age 75, unknown 16.4
2007 Male, age 72, unknown 15.2
1944 Female, age 72, unknown 14.6
2407 Male, age 75, both hemispheres 14.6
2224 Female, age 72, unknown 14.3
1816 Male, age 51, unknown 14.1
2316 Male, age 76, right hemisphere 14.0
1817 Female, age 42, unknown 13.7
2825 Male, age 18, unknown 13.7
1815 Male, age 53, unknown 13.5
Red nucleus
nTPM: 12.7
1821 Female, age 72, unknown 14.4
2823 Male, age 76, right hemisphere 14.2
1954 Female, age 42, unknown 13.5
2588 Male, age 74, left hemisphere 13.5
2769 Male, age 72, unknown 13.1
1865 Male, age 51, unknown 13.0
2503 Female, age 72, unknown 12.8
2785 Male, age 18, unknown 12.6
2725 Female, age 75, unknown 12.5
1904 Male, age 53, unknown 12.4
2227 Male, age 72, unknown 11.7
2584 Male, age 75, left hemisphere 9.0
Substantia nigra
nTPM: 13.6
2590 Female, age 75, unknown 17.4
1916 Female, age 42, unknown 16.3
2665 Male, age 74, both hemispheres 15.2
1889 Female, age 72, unknown 14.7
1851 Male, age 51, unknown 14.3
1941 Male, age 53, unknown 13.2
2241 Male, age 72, unknown 12.6
2699 Male, age 18, unknown 12.0
2583 Male, age 75, right hemisphere 11.3
2409 Female, age 72, unknown 9.3
Superior colliculus
nTPM: 13.2
1895 Male, age 76, right hemisphere 14.9
1796 Male, age 53, unknown 13.8
2587 Male, age 74, left hemisphere 13.8
1913 Female, age 42, unknown 13.5
2087 Female, age 72, unknown 13.5
2664 Male, age 75, both hemispheres 13.2
1995 Male, age 72, unknown 13.0
2261 Male, age 18, unknown 12.8
1839 Male, age 51, unknown 12.6
2668 Female, age 75, unknown 11.1
Ventral tegmental area
nTPM: 13.1
1915 Female, age 42, unknown 14.3
2218 Male, age 76, both hemispheres 14.1
2223 Female, age 72, unknown 13.7
2021 Male, age 53, unknown 13.2
2410 Female, age 72, unknown 12.2
1942 Male, age 51, unknown 10.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.4
Samples: 139

Max nTPM: 25.3
Min nTPM: 10.2
Std nTPM: 3.1
Median nTPM: 17.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 24.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 24.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 24.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 23.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 23.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 23.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 23.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 30.0
Min nTPM: 22.8
Sample A Female 30.0
Sample B Female 22.8
Sample C Male 23.6
Sample D Male 27.9
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 32.6
Min nTPM: 19.1
Sample A Female 32.6
Sample B Female 23.9
Sample C Male 19.1
Sample D Male 24.1
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 25.9
Min nTPM: 24.6
Sample B Female 24.6
Sample C Male 25.9
Sample D Male 24.6
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.3
Sample A Female 25.1
Sample B Female 22.5
Sample C Male 19.3
Sample D Male 24.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 33.2
Min nTPM: 24.8
Sample A Male 33.2
Sample B Male 30.0
Sample C Female 24.8
Sample D Female 33.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68667282 Antisense, RP_050201_02_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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