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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPHN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
115.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
86.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
82.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
82.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
79.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
74.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
71.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
70.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
65.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
62.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
53.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
48.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
30.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPHN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
1.0
554
Normal
0.9
342
Normal
0.8
261
Tumor
0.7
1043
Tumor
0.7
698
Normal
0.7
431
Tumor
0.7
696
Normal
0.6
488
Normal
0.6
861
Tumor
0.6
186
Normal
0.6
1022
Normal
0.6
218
Normal
0.6
298
Normal
0.6
778
Normal
0.6
124
Normal
0.6
1026
Normal
0.6
862
Normal
0.6
924
Normal
0.6
568
Normal
0.6
376
Normal
0.6
738
Normal
0.6
358
Normal
0.6
448
Normal
0.6
128
Normal
0.6
744
Normal
0.5
332
Normal
0.5
636
Normal
0.5
746
Normal
0.5
944
Normal
0.5
446
Normal
0.5
222
Normal
0.5
723
Tumor
0.5
484
Normal
0.5
456
Normal
0.5
818
Normal
0.5
354
Normal
0.5
436
Normal
0.5
196
Normal
0.5
938
Normal
0.5
952
Normal
0.5
452
Normal
0.5
426
Normal
0.5
1028
Normal
0.5
741
Tumor
0.5
232
Normal
0.5
912
Normal
0.5
1032
Normal
0.4
172
Normal
0.4
714
Normal
0.4
557
Tumor
0.4
742
Normal
0.4
414
Normal
0.4
445
Tumor
0.4
1014
Normal
0.4
882
Normal
0.4
412
Normal
0.4
228
Normal
0.4
392
Normal
0.4
516
Normal
0.4
964
Normal
0.4
984
Normal
0.4
482
Normal
0.4
132
Normal
0.4
756
Normal
0.4
1046
Normal
0.4
824
Normal
0.4
642
Normal
0.4
518
Normal
0.4
528
Normal
0.4
966
Normal
0.4
286
Normal
0.4
462
Normal
0.4
816
Normal
0.4
618
Normal
0.4
716
Normal
0.4
366
Normal
0.4
352
Normal
0.4
148
Normal
0.4
858
Normal
0.4
616
Normal
0.4
368
Normal
0.4
982
Normal
0.3
344
Normal
0.3
1041
Tumor
0.3
466
Normal
0.3
1044
Normal
0.3
432
Normal
0.3
864
Normal
0.3
728
Normal
0.3
922
Normal
0.3
278
Normal
0.3
534
Normal
0.3
956
Normal
0.3
258
Normal
0.3
357
Tumor
0.3
468
Normal
0.3
558
Normal
0.3
574
Normal
0.3
915
Tumor
0.3
628
Normal
0.3
648
Normal
0.3
262
Normal
0.3
664
Normal
0.3
878
Normal
0.3
494
Normal
0.3
422
Normal
0.3
474
Normal
0.3
546
Normal
0.3
572
Normal
0.3
1016
Normal
0.3
114
Normal
0.3
918
Normal
0.3
162
Normal
0.3
914
Normal
0.3
477
Tumor
0.3
314
Normal
0.3
666
Normal
0.3
954
Normal
0.3
272
Normal
0.2
867
Tumor
0.2
394
Normal
0.2
388
Normal
0.2
142
Normal
0.2
136
Normal
0.2
526
Normal
0.2
424
Normal
0.2
662
Normal
0.2
214
Normal
0.2
968
Normal
0.2
911
Tumor
0.2
926
Normal
0.2
464
Normal
0.2
513
Tumor
0.2
866
Normal
0.2
564
Normal
0.2
356
Normal
0.2
396
Normal
0.2
514
Normal
0.2
868
Normal
0.2
138
Normal
0.2
538
Normal
0.2
386
Normal
0.2
515
Tumor
0.2
981
Tumor
0.2
111
Normal
0.2
472
Normal
0.2
481
Tumor
0.2
695
Tumor
0.2
786
Normal
0.1
313
Tumor
0.1
813
Tumor
0.1
672
Normal
0.1
146
Normal
0.1
428
Normal
0.1
722
Normal
0.1
524
Normal
0.1
416
Normal
0.1
976
Normal
0.1
127
Tumor
0.1
384
Normal
0.1
955
Tumor
0.1
553
Tumor
0.1
312
Normal
0.1
884
Normal
0.1
362
Normal
0.1
958
Normal
0.1
617
Tumor
0.1
364
Normal
0.0
492
Normal
0.0
863
Tumor
0.0
737
Tumor
0.0
284
Normal
0.0
1042
Normal
0.0
953
Tumor
0.0
874
Normal
0.0
434
Normal
0.0
852
Normal
0.0
126
Normal
0.0
473
Tumor
0.0
478
Normal
0.0
217
Tumor
0.0
523
Tumor
-0.1
212
Normal
-0.1
231
Tumor
-0.1
271
Tumor
-0.1
444
Normal
-0.1
814
Normal
-0.1
451
Tumor
-0.1
257
Tumor
-0.1
185
Tumor
-0.1
536
Normal
-0.1
663
Tumor
-0.1
443
Tumor
-0.1
686
Normal
-0.1
423
Tumor
-0.1
627
Tumor
-0.1
221
Tumor
-0.1
268
Normal
-0.1
135
Tumor
-0.1
978
Normal
-0.1
267
Tumor
-0.1
1027
Tumor
-0.1
195
Tumor
-0.1
435
Tumor
-0.1
977
Tumor
-0.1
171
Tumor
-0.1
188
Normal
-0.1
353
Tumor
-0.2
967
Tumor
-0.2
715
Tumor
-0.2
957
Tumor
-0.2
1031
Tumor
-0.2
413
Tumor
-0.2
815
Tumor
-0.2
328
Normal
-0.2
224
Normal
-0.2
873
Tumor
-0.2
777
Tumor
-0.2
1015
Tumor
-0.2
361
Tumor
-0.2
883
Tumor
-0.2
192
Normal
-0.3
745
Tumor
-0.3
635
Tumor
-0.3
131
Tumor
-0.3
297
Tumor
-0.3
461
Tumor
-0.3
393
Tumor
-0.3
975
Tumor
-0.3
641
Tumor
-0.3
145
Tumor
-0.3
916
Normal
-0.3
471
Tumor
-0.3
615
Tumor
-0.3
421
Tumor
-0.3
498
Normal
-0.4
533
Tumor
-0.4
411
Tumor
-0.4
685
Tumor
-0.4
721
Tumor
-0.4
187
Tumor
-0.4
755
Tumor
-0.4
285
Tumor
-0.4
137
Tumor
-0.4
213
Tumor
-0.4
433
Tumor
-0.4
865
Tumor
-0.4
661
Tumor
-0.4
415
Tumor
-0.4
497
Tumor
-0.5
447
Tumor
-0.5
141
Tumor
-0.5
785
Tumor
-0.5
467
Tumor
-0.5
383
Tumor
-0.5
823
Tumor
-0.5
563
Tumor
-0.5
857
Tumor
-0.5
191
Tumor
-0.5
493
Tumor
-0.5
943
Tumor
-0.5
385
Tumor
-0.6
351
Tumor
-0.6
665
Tumor
-0.6
527
Tumor
-0.6
161
Tumor
-0.6
571
Tumor
-0.6
341
Tumor
-0.6
1045
Tumor
-0.6
537
Tumor
-0.6
727
Tumor
-0.6
567
Tumor
-0.6
227
Tumor
-0.6
331
Tumor
-0.6
465
Tumor
-0.6
387
Tumor
-0.6
487
Tumor
-0.6
147
Tumor
-0.6
983
Tumor
-0.6
917
Tumor
-0.6
491
Tumor
-0.7
1025
Tumor
-0.7
963
Tumor
-0.7
921
Tumor
-0.7
1013
Tumor
-0.7
223
Tumor
-0.7
343
Tumor
-0.7
881
Tumor
-0.7
327
Tumor
-0.7
455
Tumor
-0.7
125
Tumor
-0.7
363
Tumor
-0.7
937
Tumor
-0.7
311
Tumor
-0.8
517
Tumor
-0.8
1021
Tumor
-0.8
425
Tumor
-0.8
367
Tumor
-0.8
427
Tumor
-0.8
391
Tumor
-0.8
277
Tumor
-0.8
113
Tumor
-0.9
355
Tumor
-0.9
724
Normal
-0.9
365
Tumor
-0.9
671
Tumor
-0.9
877
Tumor
-0.9
525
Tumor
-0.9
925
Tumor
-0.9
647
Tumor
-1.0
923
Tumor
-1.0
743
Tumor
-1.0
375
Tumor
-1.0
483
Tumor
-1.0
697
Tumor
-1.0
817
Tumor
-1.0
211
Tumor
-1.0
123
Tumor
-1.0
913
Tumor
-1.0
851
Tumor
-1.1
535
Tumor
-1.1
965
Tumor
-1.1
573
Tumor
-1.1
951
Tumor
-1.2
713
Tumor
-1.2
463
Tumor
-1.2
283
Tumor
-1.2
545
Tumor
-1.4
395
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.