MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA Brain:9.2 nTPM
GTEx:10.6 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:69.8 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.8
2586 Male, age 75, left hemisphere 12.9
2019 Male, age 18, unknown 8.3
2828 Female, age 72, unknown 8.1
1827 Male, age 72, unknown 8.0
2219 Male, age 76, both hemispheres 8.0
2666 Male, age 74, left hemisphere 8.0
2411 Female, age 72, unknown 7.1
1870 Female, age 42, unknown 6.7
1833 Male, age 53, unknown 5.8
1830 Male, age 51, unknown 5.0
Dorsal raphe nucleus
nTPM: 8.4
2298 Female, age 72, unknown 11.3
1828 Male, age 53, unknown 8.9
2047 Male, age 72, unknown 8.2
2016 Female, age 72, unknown 7.6
2750 Male, age 76, both hemispheres 6.1
Inferior colliculus
nTPM: 8.0
1890 Male, age 53, unknown 8.2
2097 Female, age 72, unknown 8.2
1848 Female, age 42, unknown 7.8
2849 Male, age 72, unknown 7.8
Median raphe nucleus
nTPM: 6.1
2220 Male, age 76, midline 6.1
Periaquaductal grey, anterior
nTPM: 8.1
1795 Male, age 51, unknown 9.3
1947 Male, age 18, unknown 8.0
2502 Female, age 75, unknown 6.9
Periaquaductal grey, dorsal
nTPM: 7.9
2850 Male, age 76, both hemispheres 8.4
1840 Male, age 53, unknown 8.0
1831 Male, age 72, unknown 7.7
2464 Female, age 72, unknown 7.5
Periaquaductal grey, lateral
nTPM: 8.3
2272 Male, age 74, both hemispheres 11.7
2053 Male, age 18, unknown 7.8
2140 Male, age 76, both hemispheres 5.5
Pretectal area
nTPM: 8.9
1816 Male, age 51, unknown 12.0
2273 Male, age 74, both hemispheres 11.2
1944 Female, age 72, unknown 10.6
2007 Male, age 72, unknown 10.6
1817 Female, age 42, unknown 9.6
1815 Male, age 53, unknown 9.4
2224 Female, age 72, unknown 8.6
2407 Male, age 75, both hemispheres 8.0
2825 Male, age 18, unknown 7.0
2667 Female, age 75, unknown 6.0
2316 Male, age 76, right hemisphere 5.1
Red nucleus
nTPM: 7.0
2725 Female, age 75, unknown 9.3
1821 Female, age 72, unknown 8.0
2785 Male, age 18, unknown 7.5
2584 Male, age 75, left hemisphere 7.3
2769 Male, age 72, unknown 7.3
1954 Female, age 42, unknown 7.2
2503 Female, age 72, unknown 6.9
1865 Male, age 51, unknown 6.6
2227 Male, age 72, unknown 6.4
1904 Male, age 53, unknown 6.3
2823 Male, age 76, right hemisphere 5.6
2588 Male, age 74, left hemisphere 5.2
Substantia nigra
nTPM: 9.2
2665 Male, age 74, both hemispheres 10.6
1851 Male, age 51, unknown 10.5
1916 Female, age 42, unknown 10.1
1941 Male, age 53, unknown 9.9
1889 Female, age 72, unknown 9.4
2409 Female, age 72, unknown 9.2
2241 Male, age 72, unknown 8.7
2699 Male, age 18, unknown 8.5
2590 Female, age 75, unknown 8.4
2583 Male, age 75, right hemisphere 6.2
Superior colliculus
nTPM: 7.9
2668 Female, age 75, unknown 10.6
2261 Male, age 18, unknown 9.0
1796 Male, age 53, unknown 8.5
2087 Female, age 72, unknown 8.2
2664 Male, age 75, both hemispheres 7.7
1913 Female, age 42, unknown 7.6
1839 Male, age 51, unknown 7.4
2587 Male, age 74, left hemisphere 7.0
1995 Male, age 72, unknown 6.8
1895 Male, age 76, right hemisphere 6.6
Ventral tegmental area
nTPM: 8.6
2410 Female, age 72, unknown 10.0
1915 Female, age 42, unknown 9.3
2218 Male, age 76, both hemispheres 8.7
2021 Male, age 53, unknown 8.5
1942 Male, age 51, unknown 7.6
2223 Female, age 72, unknown 7.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 139

Max nTPM: 23.8
Min nTPM: 0.9
Std nTPM: 3.5
Median nTPM: 10.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 18.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 15.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 15.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 15.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 15.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 23.2
Min nTPM: 20.5
Sample A Female 23.2
Sample B Female 20.5
Sample C Male 21.5
Sample D Male 21.2
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 28.6
Min nTPM: 18.8
Sample A Female 23.9
Sample B Female 18.8
Sample C Male 28.6
Sample D Male 20.7
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 21.3
Min nTPM: 18.0
Sample B Female 18.0
Sample C Male 21.3
Sample D Male 18.6
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 27.1
Min nTPM: 20.9
Sample A Female 22.2
Sample B Female 25.0
Sample C Male 27.1
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 69.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.8
Samples: 4

Max nTPM: 72.5
Min nTPM: 67.2
Sample A Male 72.5
Sample B Male 70.8
Sample C Female 67.2
Sample D Female 68.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
71232781 Antisense, RP_050503_01_G08, Mouse strain C57BL/6J (56 days, male) 7.5

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