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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A33 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
106.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A33 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.8
Number of samples
231
Samples
Sample
Description
TPM
DO45267
0 years, male, NA, stage:3, dead, 570 days
88.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
76.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
68.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
63.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
58.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
53.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
50.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
46.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
43.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
41.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
28.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
515
Tumor
1.9
513
Tumor
1.8
777
Tumor
1.7
227
Tumor
1.5
571
Tumor
1.5
563
Tumor
1.5
925
Tumor
1.4
365
Tumor
1.4
461
Tumor
1.3
231
Tumor
1.2
724
Normal
1.1
883
Tumor
1.1
361
Tumor
1.1
557
Tumor
1.0
525
Tumor
1.0
921
Tumor
1.0
171
Tumor
1.0
473
Tumor
0.9
573
Tumor
0.9
1013
Tumor
0.9
953
Tumor
0.8
977
Tumor
0.8
463
Tumor
0.8
567
Tumor
0.8
877
Tumor
0.7
391
Tumor
0.7
341
Tumor
0.7
685
Tumor
0.7
863
Tumor
0.6
698
Normal
0.6
737
Tumor
0.6
221
Tumor
0.6
1045
Tumor
0.6
1032
Normal
0.6
1015
Tumor
0.5
965
Tumor
0.5
1026
Normal
0.5
257
Tumor
0.5
395
Tumor
0.5
223
Tumor
0.5
224
Normal
0.5
1042
Normal
0.5
851
Tumor
0.5
421
Tumor
0.4
741
Tumor
0.4
491
Tumor
0.4
455
Tumor
0.4
695
Tumor
0.4
187
Tumor
0.4
954
Normal
0.4
713
Tumor
0.4
755
Tumor
0.4
1046
Normal
0.4
285
Tumor
0.4
351
Tumor
0.4
283
Tumor
0.4
1022
Normal
0.4
271
Tumor
0.4
493
Tumor
0.3
211
Tumor
0.3
414
Normal
0.3
353
Tumor
0.3
785
Tumor
0.3
212
Normal
0.3
816
Normal
0.3
487
Tumor
0.3
913
Tumor
0.3
492
Normal
0.3
286
Normal
0.3
128
Normal
0.3
938
Normal
0.3
228
Normal
0.3
824
Normal
0.3
553
Tumor
0.3
284
Normal
0.2
477
Tumor
0.2
1027
Tumor
0.2
918
Normal
0.2
823
Tumor
0.2
815
Tumor
0.2
277
Tumor
0.2
978
Normal
0.2
957
Tumor
0.2
858
Normal
0.2
497
Tumor
0.2
498
Normal
0.2
147
Tumor
0.2
923
Tumor
0.2
818
Normal
0.2
1044
Normal
0.2
111
Normal
0.1
195
Tumor
0.1
387
Tumor
0.1
516
Normal
0.1
451
Tumor
0.1
424
Normal
0.1
1028
Normal
0.1
721
Tumor
0.1
465
Tumor
0.1
663
Tumor
0.1
661
Tumor
0.1
388
Normal
0.1
376
Normal
0.1
558
Normal
0.1
1016
Normal
0.1
386
Normal
0.1
727
Tumor
0.1
813
Tumor
0.1
926
Normal
0.1
922
Normal
0.1
524
Normal
0.1
261
Tumor
0.1
357
Tumor
0.1
394
Normal
0.0
383
Tumor
0.0
881
Tumor
0.0
393
Tumor
0.0
852
Normal
0.0
944
Normal
0.0
448
Normal
0.0
483
Tumor
0.0
951
Tumor
0.0
423
Tumor
0.0
526
Normal
0.0
125
Tumor
0.0
884
Normal
0.0
916
Normal
0.0
267
Tumor
0.0
956
Normal
0.0
343
Tumor
0.0
647
Tumor
0.0
1025
Tumor
0.0
528
Normal
0.0
574
Normal
0.0
422
Normal
0.0
917
Tumor
0.0
967
Tumor
0.0
185
Tumor
0.0
983
Tumor
0.0
427
Tumor
0.0
537
Tumor
0.0
857
Tumor
0.0
672
Normal
0.0
514
Normal
0.0
413
Tumor
0.0
745
Tumor
0.0
392
Normal
-0.1
697
Tumor
-0.1
488
Normal
-0.1
471
Tumor
-0.1
114
Normal
-0.1
426
Normal
-0.1
963
Tumor
-0.1
385
Tumor
-0.1
467
Tumor
-0.1
127
Tumor
-0.1
217
Tumor
-0.1
494
Normal
-0.1
924
Normal
-0.1
113
Tumor
-0.1
366
Normal
-0.1
1043
Tumor
-0.1
534
Normal
-0.1
481
Tumor
-0.1
112
Tumor
-0.1
915
Tumor
-0.1
937
Tumor
-0.1
396
Normal
-0.1
517
Tumor
-0.1
982
Normal
-0.1
311
Tumor
-0.1
161
Tumor
-0.1
533
Tumor
-0.1
1014
Normal
-0.1
943
Tumor
-0.1
313
Tumor
-0.1
425
Tumor
-0.2
368
Normal
-0.2
665
Tumor
-0.2
671
Tumor
-0.2
564
Normal
-0.2
362
Normal
-0.2
536
Normal
-0.2
188
Normal
-0.2
384
Normal
-0.2
984
Normal
-0.2
518
Normal
-0.2
1041
Tumor
-0.2
715
Tumor
-0.2
873
Tumor
-0.2
172
Normal
-0.2
428
Normal
-0.2
911
Tumor
-0.3
864
Normal
-0.3
126
Normal
-0.3
297
Tumor
-0.3
484
Normal
-0.3
162
Normal
-0.3
572
Normal
-0.3
714
Normal
-0.3
728
Normal
-0.3
981
Tumor
-0.3
535
Tumor
-0.3
344
Normal
-0.3
686
Normal
-0.3
662
Normal
-0.3
538
Normal
-0.3
478
Normal
-0.3
568
Normal
-0.3
447
Tumor
-0.3
123
Tumor
-0.3
546
Normal
-0.3
814
Normal
-0.3
191
Tumor
-0.3
716
Normal
-0.3
866
Normal
-0.3
868
Normal
-0.3
352
Normal
-0.3
874
Normal
-0.3
213
Tumor
-0.4
358
Normal
-0.4
666
Normal
-0.4
964
Normal
-0.4
452
Normal
-0.4
186
Normal
-0.4
468
Normal
-0.4
952
Normal
-0.4
817
Tumor
-0.4
268
Normal
-0.4
148
Normal
-0.4
545
Tumor
-0.4
124
Normal
-0.4
882
Normal
-0.4
912
Normal
-0.4
464
Normal
-0.4
342
Normal
-0.4
474
Normal
-0.4
743
Tumor
-0.4
262
Normal
-0.4
354
Normal
-0.5
192
Normal
-0.5
664
Normal
-0.5
976
Normal
-0.5
722
Normal
-0.5
456
Normal
-0.5
218
Normal
-0.5
222
Normal
-0.5
527
Tumor
-0.5
258
Normal
-0.5
466
Normal
-0.5
554
Normal
-0.5
723
Tumor
-0.5
375
Tumor
-0.5
523
Tumor
-0.5
865
Tumor
-0.5
756
Normal
-0.5
861
Tumor
-0.5
696
Normal
-0.5
968
Normal
-0.5
1031
Tumor
-0.5
966
Normal
-0.5
746
Normal
-0.5
1021
Tumor
-0.6
367
Tumor
-0.6
738
Normal
-0.6
332
Normal
-0.6
196
Normal
-0.6
214
Normal
-0.6
955
Tumor
-0.6
862
Normal
-0.6
331
Tumor
-0.6
742
Normal
-0.6
272
Normal
-0.6
314
Normal
-0.6
482
Normal
-0.7
232
Normal
-0.7
472
Normal
-0.7
958
Normal
-0.7
462
Normal
-0.7
786
Normal
-0.7
914
Normal
-0.7
298
Normal
-0.7
778
Normal
-0.7
867
Tumor
-0.8
878
Normal
-0.8
744
Normal
-0.8
975
Tumor
-0.8
278
Normal
-0.9
648
Normal
-0.9
312
Normal
-0.9
355
Tumor
N/A
356
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
