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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ETFDH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
116.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
114.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
73.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
66.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
65.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
65.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
64.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
61.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
59.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
57.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
55.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
54.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
49.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
49.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
49.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
48.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
47.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
46.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
45.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
45.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
42.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ETFDH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.8
Number of samples
231
Samples
Sample
Description
TPM
DO45129
0 years, male, NA, stage:3, alive, 1470 days
91.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
79.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
73.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
62.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
57.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
56.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
56.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
54.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
51.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
49.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
48.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
47.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
46.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
42.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
41.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
39.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
39.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
39.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
38.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
36.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
35.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
636
Normal
1.1
452
Normal
1.0
862
Normal
1.0
924
Normal
1.0
698
Normal
1.0
534
Normal
0.9
172
Normal
0.9
436
Normal
0.9
448
Normal
0.9
342
Normal
0.9
462
Normal
0.9
742
Normal
0.9
648
Normal
0.9
964
Normal
0.8
746
Normal
0.8
922
Normal
0.8
128
Normal
0.8
918
Normal
0.8
162
Normal
0.8
944
Normal
0.8
1046
Normal
0.8
618
Normal
0.8
466
Normal
0.8
723
Tumor
0.8
568
Normal
0.8
984
Normal
0.8
786
Normal
0.8
915
Tumor
0.8
518
Normal
0.8
914
Normal
0.8
426
Normal
0.8
394
Normal
0.8
186
Normal
0.7
328
Normal
0.7
513
Tumor
0.7
298
Normal
0.7
446
Normal
0.7
278
Normal
0.7
955
Tumor
0.7
526
Normal
0.7
716
Normal
0.7
528
Normal
0.7
1016
Normal
0.7
488
Normal
0.7
414
Normal
0.7
1022
Normal
0.7
484
Normal
0.7
816
Normal
0.7
938
Normal
0.7
314
Normal
0.7
664
Normal
0.7
756
Normal
0.7
864
Normal
0.7
884
Normal
0.7
546
Normal
0.7
428
Normal
0.7
356
Normal
0.7
258
Normal
0.7
332
Normal
0.7
952
Normal
0.6
686
Normal
0.6
1032
Normal
0.6
616
Normal
0.6
882
Normal
0.6
868
Normal
0.6
714
Normal
0.6
874
Normal
0.6
564
Normal
0.6
866
Normal
0.6
376
Normal
0.6
218
Normal
0.6
111
Normal
0.6
858
Normal
0.6
388
Normal
0.6
982
Normal
0.6
358
Normal
0.6
464
Normal
0.6
232
Normal
0.6
1026
Normal
0.6
554
Normal
0.6
148
Normal
0.6
472
Normal
0.6
344
Normal
0.6
412
Normal
0.6
976
Normal
0.6
818
Normal
0.6
628
Normal
0.6
494
Normal
0.6
926
Normal
0.6
722
Normal
0.6
482
Normal
0.6
956
Normal
0.6
666
Normal
0.6
824
Normal
0.6
738
Normal
0.6
514
Normal
0.6
468
Normal
0.6
558
Normal
0.6
214
Normal
0.5
744
Normal
0.5
1014
Normal
0.5
392
Normal
0.5
396
Normal
0.5
912
Normal
0.5
878
Normal
0.5
354
Normal
0.5
911
Tumor
0.5
424
Normal
0.5
627
Tumor
0.5
312
Normal
0.5
728
Normal
0.5
474
Normal
0.5
416
Normal
0.5
696
Normal
0.5
1044
Normal
0.5
366
Normal
0.5
196
Normal
0.5
538
Normal
0.5
286
Normal
0.5
132
Normal
0.5
642
Normal
0.5
978
Normal
0.5
364
Normal
0.5
1028
Normal
0.5
968
Normal
0.5
327
Tumor
0.4
352
Normal
0.4
852
Normal
0.4
136
Normal
0.4
966
Normal
0.4
916
Normal
0.4
778
Normal
0.4
114
Normal
0.4
222
Normal
0.4
362
Normal
0.4
138
Normal
0.4
672
Normal
0.4
662
Normal
0.4
262
Normal
0.4
142
Normal
0.4
432
Normal
0.4
1042
Normal
0.4
456
Normal
0.3
954
Normal
0.3
212
Normal
0.3
146
Normal
0.3
572
Normal
0.3
228
Normal
0.3
422
Normal
0.3
574
Normal
0.3
386
Normal
0.3
365
Tumor
0.3
126
Normal
0.2
465
Tumor
0.2
368
Normal
0.2
284
Normal
0.2
434
Normal
0.2
785
Tumor
0.2
272
Normal
0.2
524
Normal
0.2
188
Normal
0.2
958
Normal
0.2
492
Normal
0.2
487
Tumor
0.2
516
Normal
0.1
481
Tumor
0.1
124
Normal
0.1
451
Tumor
0.1
393
Tumor
0.1
224
Normal
0.1
268
Normal
0.0
937
Tumor
0.0
515
Tumor
0.0
745
Tumor
0.0
981
Tumor
0.0
361
Tumor
0.0
478
Normal
0.0
498
Normal
-0.1
145
Tumor
-0.1
1025
Tumor
-0.1
1041
Tumor
-0.1
777
Tumor
-0.1
695
Tumor
-0.1
536
Normal
-0.1
141
Tumor
-0.1
953
Tumor
-0.1
755
Tumor
-0.2
721
Tumor
-0.2
192
Normal
-0.2
913
Tumor
-0.2
217
Tumor
-0.2
851
Tumor
-0.2
857
Tumor
-0.2
1045
Tumor
-0.2
384
Normal
-0.2
261
Tumor
-0.2
873
Tumor
-0.2
461
Tumor
-0.2
137
Tumor
-0.2
195
Tumor
-0.3
444
Normal
-0.3
1043
Tumor
-0.3
411
Tumor
-0.3
191
Tumor
-0.3
113
Tumor
-0.4
423
Tumor
-0.4
925
Tumor
-0.4
923
Tumor
-0.4
1015
Tumor
-0.4
615
Tumor
-0.5
713
Tumor
-0.5
557
Tumor
-0.5
353
Tumor
-0.5
127
Tumor
-0.5
571
Tumor
-0.5
223
Tumor
-0.5
727
Tumor
-0.5
341
Tumor
-0.5
617
Tumor
-0.5
415
Tumor
-0.6
187
Tumor
-0.6
227
Tumor
-0.6
445
Tumor
-0.6
491
Tumor
-0.6
867
Tumor
-0.6
563
Tumor
-0.6
433
Tumor
-0.6
921
Tumor
-0.6
957
Tumor
-0.6
231
Tumor
-0.6
147
Tumor
-0.7
363
Tumor
-0.7
685
Tumor
-0.7
257
Tumor
-0.7
647
Tumor
-0.7
1027
Tumor
-0.7
447
Tumor
-0.7
977
Tumor
-0.7
161
Tumor
-0.7
861
Tumor
-0.7
267
Tumor
-0.7
483
Tumor
-0.7
185
Tumor
-0.7
635
Tumor
-0.8
823
Tumor
-0.8
943
Tumor
-0.8
741
Tumor
-0.8
271
Tumor
-0.9
883
Tumor
-0.9
443
Tumor
-0.9
497
Tumor
-0.9
477
Tumor
-0.9
523
Tumor
-0.9
383
Tumor
-0.9
355
Tumor
-0.9
553
Tumor
-0.9
112
Tumor
-0.9
814
Normal
-0.9
313
Tumor
-0.9
171
Tumor
-0.9
467
Tumor
-0.9
641
Tumor
-1.0
537
Tumor
-1.0
715
Tumor
-1.0
435
Tumor
-1.0
395
Tumor
-1.0
967
Tumor
-1.0
863
Tumor
-1.0
533
Tumor
-1.0
471
Tumor
-1.0
135
Tumor
-1.0
567
Tumor
-1.1
463
Tumor
-1.1
963
Tumor
-1.1
663
Tumor
-1.1
881
Tumor
-1.1
473
Tumor
-1.1
493
Tumor
-1.1
1013
Tumor
-1.1
221
Tumor
-1.1
665
Tumor
-1.1
277
Tumor
-1.2
421
Tumor
-1.2
297
Tumor
-1.2
213
Tumor
-1.2
1031
Tumor
-1.2
357
Tumor
-1.2
813
Tumor
-1.2
517
Tumor
-1.2
917
Tumor
-1.2
697
Tumor
-1.2
817
Tumor
-1.2
125
Tumor
-1.2
724
Normal
-1.2
123
Tumor
-1.3
535
Tumor
-1.3
427
Tumor
-1.3
413
Tumor
-1.3
983
Tumor
-1.3
737
Tumor
-1.3
431
Tumor
-1.3
391
Tumor
-1.3
865
Tumor
-1.3
975
Tumor
-1.4
951
Tumor
-1.4
525
Tumor
-1.4
573
Tumor
-1.4
425
Tumor
-1.4
343
Tumor
-1.5
387
Tumor
-1.5
527
Tumor
-1.5
1021
Tumor
-1.6
455
Tumor
-1.6
965
Tumor
-1.6
367
Tumor
-1.6
815
Tumor
-1.6
331
Tumor
-1.6
131
Tumor
-1.7
311
Tumor
-1.7
285
Tumor
-1.7
283
Tumor
-1.8
375
Tumor
-1.8
743
Tumor
-1.8
545
Tumor
-1.8
385
Tumor
-1.8
351
Tumor
-1.8
211
Tumor
-1.8
877
Tumor
-1.9
671
Tumor
-1.9
661
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
