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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HOPX is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
86.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
62.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HOPX is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
104.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
69.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
67.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
63.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
492
Normal
2.2
355
Tumor
2.1
545
Tumor
1.9
383
Tumor
1.8
455
Tumor
1.8
917
Tumor
1.6
421
Tumor
1.6
538
Normal
1.3
375
Tumor
1.3
185
Tumor
1.2
883
Tumor
1.1
697
Tumor
1.0
213
Tumor
1.0
884
Normal
1.0
921
Tumor
1.0
535
Tumor
0.9
311
Tumor
0.8
343
Tumor
0.7
491
Tumor
0.6
912
Normal
0.6
817
Tumor
0.6
943
Tumor
0.5
427
Tumor
0.5
483
Tumor
0.5
447
Tumor
0.4
975
Tumor
0.4
187
Tumor
0.3
161
Tumor
0.3
881
Tumor
0.3
923
Tumor
0.3
192
Normal
0.3
956
Normal
0.3
188
Normal
0.2
823
Tumor
0.2
463
Tumor
0.2
914
Normal
0.1
536
Normal
0.1
416
Normal
0.1
976
Normal
0.1
546
Normal
0.1
277
Tumor
0.1
958
Normal
0.1
968
Normal
0.1
1043
Tumor
0.1
724
Normal
0.0
813
Tumor
0.0
412
Normal
-0.1
214
Normal
-0.1
297
Tumor
-0.1
365
Tumor
-0.1
924
Normal
-0.1
963
Tumor
-0.1
952
Normal
-0.2
1045
Tumor
-0.2
328
Normal
-0.2
422
Normal
-0.2
744
Normal
-0.2
413
Tumor
-0.3
785
Tumor
-0.3
527
Tumor
-0.3
967
Tumor
-0.3
966
Normal
-0.3
363
Tumor
-0.3
356
Normal
-0.3
916
Normal
-0.3
964
Normal
-0.3
671
Tumor
-0.3
698
Normal
-0.3
497
Tumor
-0.4
362
Normal
-0.4
911
Tumor
-0.4
415
Tumor
-0.4
218
Normal
-0.4
327
Tumor
-0.4
366
Normal
-0.4
746
Normal
-0.4
493
Tumor
-0.4
913
Tumor
-0.5
814
Normal
-0.5
331
Tumor
-0.5
364
Normal
-0.5
965
Tumor
-0.6
661
Tumor
-0.6
498
Normal
-0.6
915
Tumor
-0.6
618
Normal
-0.6
358
Normal
-0.6
148
Normal
-0.6
312
Normal
-0.6
738
Normal
-0.6
196
Normal
-0.6
728
Normal
-0.6
344
Normal
-0.6
755
Tumor
-0.7
627
Tumor
-0.7
918
Normal
-0.7
642
Normal
-0.7
448
Normal
-0.7
742
Normal
-0.7
426
Normal
-0.7
937
Tumor
-0.7
641
Tumor
-0.7
816
Normal
-0.7
313
Tumor
-0.7
1044
Normal
-0.7
877
Tumor
-0.7
186
Normal
-0.7
953
Tumor
-0.7
636
Normal
-0.8
452
Normal
-0.8
162
Normal
-0.8
428
Normal
-0.8
957
Tumor
-0.8
662
Normal
-0.8
778
Normal
-0.8
925
Tumor
-0.9
858
Normal
-0.9
615
Tumor
-0.9
818
Normal
-0.9
384
Normal
-0.9
878
Normal
-0.9
411
Tumor
-0.9
882
Normal
-0.9
172
Normal
-0.9
425
Tumor
-0.9
534
Normal
-1.0
628
Normal
-1.0
368
Normal
-1.0
464
Normal
-1.0
756
Normal
-1.0
616
Normal
-1.0
195
Tumor
-1.0
456
Normal
-1.0
647
Tumor
-1.0
298
Normal
-1.0
955
Tumor
-1.0
352
Normal
-1.0
663
Tumor
-1.0
672
Normal
-1.0
376
Normal
-1.0
354
Normal
-1.1
467
Tumor
-1.1
217
Tumor
-1.1
815
Tumor
-1.1
922
Normal
-1.1
944
Normal
-1.1
451
Tumor
-1.1
341
Tumor
-1.1
938
Normal
-1.1
342
Normal
-1.1
954
Normal
-1.1
222
Normal
-1.2
786
Normal
-1.2
1046
Normal
-1.2
664
Normal
-1.2
424
Normal
-1.2
332
Normal
-1.2
191
Tumor
-1.2
278
Normal
-1.3
367
Tumor
-1.3
824
Normal
-1.3
926
Normal
-1.3
466
Normal
-1.3
617
Tumor
-1.3
533
Tumor
-1.3
468
Normal
-1.3
361
Tumor
-1.3
314
Normal
-1.3
554
Normal
-1.4
537
Tumor
-1.4
414
Normal
-1.4
353
Tumor
-1.4
857
Tumor
-1.4
743
Tumor
-1.4
357
Tumor
-1.5
553
Tumor
-1.5
528
Normal
-1.5
494
Normal
-1.5
635
Tumor
-1.5
727
Tumor
-1.5
665
Tumor
-1.5
488
Normal
-1.6
484
Normal
-1.6
851
Tumor
-1.6
221
Tumor
-1.6
648
Normal
-1.6
737
Tumor
-1.6
487
Tumor
-1.7
147
Tumor
-1.7
852
Normal
-1.7
951
Tumor
-1.7
777
Tumor
-1.8
741
Tumor
-1.8
745
Tumor
-1.9
666
Normal
-1.9
423
Tumor
-2.1
723
Tumor
-2.4
465
Tumor
-2.5
171
Tumor
-2.5
351
Tumor
-2.7
471
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
474
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
862
Normal
N/A
983
Tumor
N/A
863
Tumor
N/A
984
Normal
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
