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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
191.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
981.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
925.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
832.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
831.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
829.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
794.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
682.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
678.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
667.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
659.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
630.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
619.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
604.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
587.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
578.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
567.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
564.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
524.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
522.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
521.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
520.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
517.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
515.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
498.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
497.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
481.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
466.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
457.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
456.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
451.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
445.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
441.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
438.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
429.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
416.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
412.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
401.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
400.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
399.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
394.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
392.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
391.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
389.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
386.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
368.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
368.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
367.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
366.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
365.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
359.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
356.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
351.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
351.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
350.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
344.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
343.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
339.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
338.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
328.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
328.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
328.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
326.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
323.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
322.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
316.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
315.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
312.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
309.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
305.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
303.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
301.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
296.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
293.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
292.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
285.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
285.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
284.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
283.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
281.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
278.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
268.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
267.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
267.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
265.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
264.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
261.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
261.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
259.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
256.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
253.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
252.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
252.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
252.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
251.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
250.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
248.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
247.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
247.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
245.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
245.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
245.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
244.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
243.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
242.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
241.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
236.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
235.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
234.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
233.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
232.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
225.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
221.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
220.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
220.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
220.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
219.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
219.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
218.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
218.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
218.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
218.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
217.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
217.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
216.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
216.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
212.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
212.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
210.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
209.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
205.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
204.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
200.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
197.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
197.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
197.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
197.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
196.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
195.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
194.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
190.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
186.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
177.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
177.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
176.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
175.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
174.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
174.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
174.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
173.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
169.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
169.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
167.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
165.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
163.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
163.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
163.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
162.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
158.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
157.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
155.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
154.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
153.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
153.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
153.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
153.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
152.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
152.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
152.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
150.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
150.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
150.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
150.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
150.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
149.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
147.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
147.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
146.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
146.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
141.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
141.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
140.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
140.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
140.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
137.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
137.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
137.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
136.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
136.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
135.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
134.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
133.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
133.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
132.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
132.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
130.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
126.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
124.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
124.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
123.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
122.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
121.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
121.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
120.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
119.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
119.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
119.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
115.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
115.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
114.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
113.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
112.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
111.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
108.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
108.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
107.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
107.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
107.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
106.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
106.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
106.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
105.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
105.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
105.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
104.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
101.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
100.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
98.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
96.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
96.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
95.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
94.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
92.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
91.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
91.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
91.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
90.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
89.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
89.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
89.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
88.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
87.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
86.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
85.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
84.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
84.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
84.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
84.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
83.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
82.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
82.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
81.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
81.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
80.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
80.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
80.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
79.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
79.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
79.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
77.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
77.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
77.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
76.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
75.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
74.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
74.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
72.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
72.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
71.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
71.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
70.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
68.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
67.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
67.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
65.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
65.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
65.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
65.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
65.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
65.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
65.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
64.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
63.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
61.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
60.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
60.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
60.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
58.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
57.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
57.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
57.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
54.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
54.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
51.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
51.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
49.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
47.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
46.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
45.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
45.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
40.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRG1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
185.3
Number of samples
231
Samples
Sample
Description
TPM
DO50850
0 years, male, NA, stage:3, alive, 720 days
1464.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
1134.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
968.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
960.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
905.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
880.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
828.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
786.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
769.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
620.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
618.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
573.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
511.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
510.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
498.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
497.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
494.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
487.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
482.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
480.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
472.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
467.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
400.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
396.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
387.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
387.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
383.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
382.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
377.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
376.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
358.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
358.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
351.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
349.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
331.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
330.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
324.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
323.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
311.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
307.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
302.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
290.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
278.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
273.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
269.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
266.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
265.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
262.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
255.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
253.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
247.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
244.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
244.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
244.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
244.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
243.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
240.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
237.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
236.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
232.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
231.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
228.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
222.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
216.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
214.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
211.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
211.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
209.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
197.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
197.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
192.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
191.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
184.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
177.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
174.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
173.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
171.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
171.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
170.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
168.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
165.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
161.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
160.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
159.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
156.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
155.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
153.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
153.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
152.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
150.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
146.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
146.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
146.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
145.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
142.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
140.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
140.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
140.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
139.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
139.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
135.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
135.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
134.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
133.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
133.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
133.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
131.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
131.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
127.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
126.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
126.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
124.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
120.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
119.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
119.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
116.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
114.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
114.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
114.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
113.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
113.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
111.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
110.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
110.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
109.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
109.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
108.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
106.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
102.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
102.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
102.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
101.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
101.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
99.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
92.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
91.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
91.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
90.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
89.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
86.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
85.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
85.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
84.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
84.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
84.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
83.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
83.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
83.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
82.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
79.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
77.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
76.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
76.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
75.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
74.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
73.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
73.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
72.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
71.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
71.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
68.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
68.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
66.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
65.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
63.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
61.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
58.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
58.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
57.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
55.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
55.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
54.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
53.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
52.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
52.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
51.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
48.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
47.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
45.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
3.0
395
Tumor
1.7
535
Tumor
1.5
573
Tumor
1.4
697
Tumor
1.4
877
Tumor
1.3
536
Normal
1.3
671
Tumor
1.2
125
Tumor
1.2
422
Normal
1.1
672
Normal
1.1
135
Tumor
1.1
217
Tumor
1.1
344
Normal
1.0
223
Tumor
0.9
745
Tumor
0.9
218
Normal
0.9
642
Normal
0.8
113
Tumor
0.8
396
Normal
0.8
1026
Normal
0.8
937
Tumor
0.7
523
Tumor
0.7
557
Tumor
0.7
558
Normal
0.7
375
Tumor
0.7
813
Tumor
0.7
391
Tumor
0.7
352
Normal
0.7
368
Normal
0.6
192
Normal
0.6
524
Normal
0.6
494
Normal
0.6
286
Normal
0.6
823
Tumor
0.6
1044
Normal
0.6
641
Tumor
0.6
863
Tumor
0.6
526
Normal
0.5
392
Normal
0.5
851
Tumor
0.5
224
Normal
0.5
525
Tumor
0.5
467
Tumor
0.5
744
Normal
0.5
1025
Tumor
0.5
817
Tumor
0.5
984
Normal
0.4
815
Tumor
0.4
545
Tumor
0.4
1045
Tumor
0.4
283
Tumor
0.4
917
Tumor
0.4
498
Normal
0.4
636
Normal
0.4
488
Normal
0.4
983
Tumor
0.4
527
Tumor
0.4
471
Tumor
0.4
568
Normal
0.4
342
Normal
0.4
778
Normal
0.4
814
Normal
0.4
353
Tumor
0.4
1015
Tumor
0.4
425
Tumor
0.4
857
Tumor
0.3
722
Normal
0.3
546
Normal
0.3
393
Tumor
0.3
696
Normal
0.3
686
Normal
0.3
421
Tumor
0.3
723
Tumor
0.3
967
Tumor
0.3
142
Normal
0.3
953
Tumor
0.2
195
Tumor
0.2
228
Normal
0.2
685
Tumor
0.2
968
Normal
0.2
777
Tumor
0.2
538
Normal
0.2
445
Tumor
0.2
514
Normal
0.2
227
Tumor
0.2
447
Tumor
0.2
981
Tumor
0.2
285
Tumor
0.2
975
Tumor
0.2
1022
Normal
0.2
492
Normal
0.2
924
Normal
0.2
358
Normal
0.2
191
Tumor
0.2
354
Normal
0.2
487
Tumor
0.1
367
Tumor
0.1
284
Normal
0.1
785
Tumor
0.1
574
Normal
0.1
1028
Normal
0.1
455
Tumor
0.1
444
Normal
0.1
517
Tumor
0.1
938
Normal
0.1
446
Normal
0.1
951
Tumor
0.1
721
Tumor
0.1
384
Normal
0.1
635
Tumor
0.0
746
Normal
0.0
376
Normal
0.0
713
Tumor
0.0
695
Tumor
0.0
563
Tumor
0.0
426
Normal
0.0
553
Tumor
0.0
126
Normal
0.0
491
Tumor
0.0
816
Normal
0.0
978
Normal
0.0
383
Tumor
0.0
572
Normal
0.0
141
Tumor
0.0
918
Normal
0.0
327
Tumor
0.0
124
Normal
0.0
474
Normal
0.0
616
Normal
0.0
232
Normal
0.0
665
Tumor
0.0
982
Normal
0.0
497
Tumor
0.0
448
Normal
0.0
414
Normal
0.0
187
Tumor
0.0
618
Normal
0.0
952
Normal
0.0
528
Normal
-0.1
351
Tumor
-0.1
394
Normal
-0.1
515
Tumor
-0.1
852
Normal
-0.1
956
Normal
-0.1
571
Tumor
-0.1
145
Tumor
-0.1
878
Normal
-0.1
866
Normal
-0.1
261
Tumor
-0.1
332
Normal
-0.1
212
Normal
-0.1
468
Normal
-0.1
966
Normal
-0.1
617
Tumor
-0.1
958
Normal
-0.1
567
Tumor
-0.1
954
Normal
-0.1
1043
Tumor
-0.1
615
Tumor
-0.1
944
Normal
-0.2
716
Normal
-0.2
493
Tumor
-0.2
386
Normal
-0.2
913
Tumor
-0.2
728
Normal
-0.2
534
Normal
-0.2
518
Normal
-0.2
1046
Normal
-0.2
1014
Normal
-0.2
311
Tumor
-0.2
213
Tumor
-0.2
513
Tumor
-0.2
923
Tumor
-0.2
861
Tumor
-0.2
451
Tumor
-0.2
554
Normal
-0.2
147
Tumor
-0.2
452
Normal
-0.2
926
Normal
-0.2
1021
Tumor
-0.2
714
Normal
-0.2
1016
Normal
-0.2
884
Normal
-0.2
466
Normal
-0.2
963
Tumor
-0.2
564
Normal
-0.3
433
Tumor
-0.3
388
Normal
-0.3
331
Tumor
-0.3
756
Normal
-0.3
955
Tumor
-0.3
313
Tumor
-0.3
743
Tumor
-0.3
277
Tumor
-0.3
463
Tumor
-0.3
114
Normal
-0.3
364
Normal
-0.3
214
Normal
-0.3
111
Normal
-0.3
431
Tumor
-0.3
138
Normal
-0.3
964
Normal
-0.3
478
Normal
-0.3
738
Normal
-0.3
666
Normal
-0.3
516
Normal
-0.4
1027
Tumor
-0.4
267
Tumor
-0.4
1041
Tumor
-0.4
977
Tumor
-0.4
865
Tumor
-0.4
737
Tumor
-0.4
862
Normal
-0.4
943
Tumor
-0.4
664
Normal
-0.4
916
Normal
-0.4
755
Tumor
-0.4
858
Normal
-0.4
914
Normal
-0.4
662
Normal
-0.4
648
Normal
-0.4
482
Normal
-0.4
456
Normal
-0.4
262
Normal
-0.4
148
Normal
-0.4
976
Normal
-0.4
196
Normal
-0.4
724
Normal
-0.4
537
Tumor
-0.4
965
Tumor
-0.4
881
Tumor
-0.4
922
Normal
-0.4
314
Normal
-0.5
912
Normal
-0.5
698
Normal
-0.5
424
Normal
-0.5
297
Tumor
-0.5
443
Tumor
-0.5
128
Normal
-0.5
185
Tumor
-0.5
663
Tumor
-0.5
385
Tumor
-0.5
355
Tumor
-0.5
484
Normal
-0.5
328
Normal
-0.5
786
Normal
-0.5
464
Normal
-0.5
341
Tumor
-0.5
628
Normal
-0.5
742
Normal
-0.5
112
Tumor
-0.5
915
Tumor
-0.5
312
Normal
-0.5
221
Tumor
-0.5
715
Tumor
-0.5
434
Normal
-0.5
741
Tumor
-0.5
925
Tumor
-0.5
818
Normal
-0.5
132
Normal
-0.5
136
Normal
-0.5
413
Tumor
-0.6
131
Tumor
-0.6
462
Normal
-0.6
883
Tumor
-0.6
957
Tumor
-0.6
137
Tumor
-0.6
1032
Normal
-0.6
146
Normal
-0.6
387
Tumor
-0.6
186
Normal
-0.6
361
Tumor
-0.6
423
Tumor
-0.6
824
Normal
-0.6
366
Normal
-0.6
363
Tumor
-0.6
864
Normal
-0.6
172
Normal
-0.6
461
Tumor
-0.6
481
Tumor
-0.6
428
Normal
-0.7
222
Normal
-0.7
272
Normal
-0.7
357
Tumor
-0.7
627
Tumor
-0.7
882
Normal
-0.7
472
Normal
-0.7
365
Tumor
-0.7
432
Normal
-0.7
258
Normal
-0.7
123
Tumor
-0.7
257
Tumor
-0.7
356
Normal
-0.7
268
Normal
-0.7
465
Tumor
-0.7
211
Tumor
-0.8
921
Tumor
-0.8
412
Normal
-0.8
873
Tumor
-0.8
533
Tumor
-0.8
188
Normal
-0.8
647
Tumor
-0.8
868
Normal
-0.8
436
Normal
-0.8
278
Normal
-0.8
483
Tumor
-0.8
162
Normal
-0.8
727
Tumor
-0.8
1042
Normal
-0.8
362
Normal
-0.8
874
Normal
-0.8
416
Normal
-0.9
298
Normal
-0.9
911
Tumor
-0.9
1031
Tumor
-0.9
415
Tumor
-0.9
1013
Tumor
-0.9
477
Tumor
-1.1
867
Tumor
-1.1
271
Tumor
-1.1
231
Tumor
-1.1
127
Tumor
-1.2
661
Tumor
-1.2
473
Tumor
-1.2
411
Tumor
-1.3
427
Tumor
-1.3
435
Tumor
-1.3
161
Tumor
-1.3
171
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.