MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.5 nTPM
HPA Brain:33.9 nTPM
GTEx:23.5 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:62.2 nTPM
Mouse:45.0 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
2586 Male, age 75, left hemisphere 34.2
2666 Male, age 74, left hemisphere 32.1
1827 Male, age 72, unknown 30.5
2828 Female, age 72, unknown 29.1
2219 Male, age 76, both hemispheres 27.1
1870 Female, age 42, unknown 26.3
2411 Female, age 72, unknown 26.2
2019 Male, age 18, unknown 24.2
1833 Male, age 53, unknown 23.6
1830 Male, age 51, unknown 20.8
Dorsal raphe nucleus
nTPM: 28.3
2298 Female, age 72, unknown 32.2
2047 Male, age 72, unknown 31.8
1828 Male, age 53, unknown 28.1
2750 Male, age 76, both hemispheres 25.6
2016 Female, age 72, unknown 23.7
Inferior colliculus
nTPM: 24.5
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 24.5
1890 Male, age 53, unknown 23.8
2849 Male, age 72, unknown 22.8
Median raphe nucleus
nTPM: 33.5
2220 Male, age 76, midline 33.5
Periaquaductal grey, anterior
nTPM: 33.9
2502 Female, age 75, unknown 35.7
1947 Male, age 18, unknown 33.6
1795 Male, age 51, unknown 32.4
Periaquaductal grey, dorsal
nTPM: 28.5
1840 Male, age 53, unknown 32.4
2850 Male, age 76, both hemispheres 28.9
1831 Male, age 72, unknown 26.6
2464 Female, age 72, unknown 25.9
Periaquaductal grey, lateral
nTPM: 27.5
2053 Male, age 18, unknown 31.6
2140 Male, age 76, both hemispheres 28.2
2272 Male, age 74, both hemispheres 22.6
Pretectal area
nTPM: 30.4
1816 Male, age 51, unknown 39.3
1944 Female, age 72, unknown 33.8
2667 Female, age 75, unknown 31.3
2007 Male, age 72, unknown 31.2
1817 Female, age 42, unknown 31.1
2825 Male, age 18, unknown 30.8
2224 Female, age 72, unknown 30.1
1815 Male, age 53, unknown 27.9
2273 Male, age 74, both hemispheres 26.9
2407 Male, age 75, both hemispheres 26.7
2316 Male, age 76, right hemisphere 24.8
Red nucleus
nTPM: 24.4
2584 Male, age 75, left hemisphere 29.5
2725 Female, age 75, unknown 28.0
2588 Male, age 74, left hemisphere 26.3
2823 Male, age 76, right hemisphere 25.3
1821 Female, age 72, unknown 25.0
2227 Male, age 72, unknown 23.4
1904 Male, age 53, unknown 23.2
2785 Male, age 18, unknown 23.1
2503 Female, age 72, unknown 23.0
1954 Female, age 42, unknown 22.5
2769 Male, age 72, unknown 21.9
1865 Male, age 51, unknown 21.8
Substantia nigra
nTPM: 31.7
1916 Female, age 42, unknown 39.2
2241 Male, age 72, unknown 36.6
1851 Male, age 51, unknown 35.0
1941 Male, age 53, unknown 33.9
2665 Male, age 74, both hemispheres 32.8
1889 Female, age 72, unknown 31.2
2699 Male, age 18, unknown 28.6
2583 Male, age 75, right hemisphere 28.5
2409 Female, age 72, unknown 27.4
2590 Female, age 75, unknown 24.1
Superior colliculus
nTPM: 27.7
2664 Male, age 75, both hemispheres 40.2
2087 Female, age 72, unknown 31.4
2261 Male, age 18, unknown 30.1
1796 Male, age 53, unknown 29.6
2668 Female, age 75, unknown 28.2
1895 Male, age 76, right hemisphere 25.4
1839 Male, age 51, unknown 24.9
1995 Male, age 72, unknown 23.4
2587 Male, age 74, left hemisphere 23.4
1913 Female, age 42, unknown 20.7
Ventral tegmental area
nTPM: 32.5
1942 Male, age 51, unknown 36.9
1915 Female, age 42, unknown 36.1
2218 Male, age 76, both hemispheres 34.6
2021 Male, age 53, unknown 32.1
2410 Female, age 72, unknown 29.5
2223 Female, age 72, unknown 25.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 43.1
Min nTPM: 6.4
Std nTPM: 6.7
Median nTPM: 23.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 43.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 40.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 39.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 38.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 37.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 37.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 33.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 33.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 32.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.3
Samples: 4

Max nTPM: 91.9
Min nTPM: 27.3
Sample A Female 91.9
Sample B Female 52.6
Sample C Male 77.2
Sample D Male 27.3
Midbrain
nTPM: 54.8
Samples: 4

Max nTPM: 64.5
Min nTPM: 43.5
Sample A Female 53.3
Sample B Female 64.5
Sample C Male 57.7
Sample D Male 43.5
Periaqueductal gray
nTPM: 50.2
Samples: 3

Max nTPM: 56.7
Min nTPM: 39.0
Sample B Female 54.9
Sample C Male 56.7
Sample D Male 39.0
Superior colliculi
nTPM: 48.5
Samples: 4

Max nTPM: 61.5
Min nTPM: 37.9
Sample A Female 61.5
Sample B Female 37.9
Sample C Male 48.8
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 47.9
Min nTPM: 43.0
Sample A Male 45.0
Sample B Male 44.0
Sample C Female 43.0
Sample D Female 47.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68844062 Antisense, RP_050217_02_G11, Mouse strain C57BL/6J (56 days, male) 0.9

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