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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRMT61B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRMT61B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
1.8
393
Tumor
1.5
477
Tumor
1.2
627
Tumor
1.1
1041
Tumor
1.0
925
Tumor
1.0
911
Tumor
0.9
537
Tumor
0.9
741
Tumor
0.8
147
Tumor
0.8
411
Tumor
0.8
427
Tumor
0.8
513
Tumor
0.7
465
Tumor
0.7
745
Tumor
0.7
435
Tumor
0.7
571
Tumor
0.7
695
Tumor
0.7
191
Tumor
0.7
713
Tumor
0.7
685
Tumor
0.7
517
Tumor
0.6
363
Tumor
0.6
391
Tumor
0.6
127
Tumor
0.6
145
Tumor
0.6
937
Tumor
0.6
615
Tumor
0.6
231
Tumor
0.6
557
Tumor
0.6
665
Tumor
0.6
473
Tumor
0.5
261
Tumor
0.5
641
Tumor
0.5
915
Tumor
0.5
967
Tumor
0.5
483
Tumor
0.5
131
Tumor
0.5
413
Tumor
0.5
423
Tumor
0.4
785
Tumor
0.4
448
Normal
0.4
1025
Tumor
0.4
742
Normal
0.4
546
Normal
0.4
361
Tumor
0.4
113
Tumor
0.4
647
Tumor
0.4
1013
Tumor
0.4
1043
Tumor
0.4
963
Tumor
0.4
715
Tumor
0.4
873
Tumor
0.4
743
Tumor
0.4
135
Tumor
0.4
487
Tumor
0.3
257
Tumor
0.3
327
Tumor
0.3
533
Tumor
0.3
414
Normal
0.3
968
Normal
0.3
558
Normal
0.3
1016
Normal
0.3
221
Tumor
0.3
171
Tumor
0.3
965
Tumor
0.3
786
Normal
0.3
428
Normal
0.3
567
Tumor
0.2
724
Normal
0.2
568
Normal
0.2
957
Tumor
0.2
148
Normal
0.2
447
Tumor
0.2
528
Normal
0.2
977
Tumor
0.2
616
Normal
0.2
1015
Tumor
0.2
867
Tumor
0.2
983
Tumor
0.2
868
Normal
0.2
367
Tumor
0.2
426
Normal
0.2
1027
Tumor
0.2
488
Normal
0.2
746
Normal
0.2
267
Tumor
0.2
446
Normal
0.2
883
Tumor
0.2
628
Normal
0.2
421
Tumor
0.2
564
Normal
0.2
141
Tumor
0.2
1031
Tumor
0.2
525
Tumor
0.2
926
Normal
0.1
365
Tumor
0.1
964
Normal
0.1
545
Tumor
0.1
535
Tumor
0.1
196
Normal
0.1
884
Normal
0.1
1026
Normal
0.1
128
Normal
0.1
755
Tumor
0.1
553
Tumor
0.1
132
Normal
0.1
981
Tumor
0.1
195
Tumor
0.1
526
Normal
0.1
618
Normal
0.1
642
Normal
0.1
912
Normal
0.1
984
Normal
0.1
636
Normal
0.1
332
Normal
0.1
866
Normal
0.1
212
Normal
0.1
466
Normal
0.1
328
Normal
0.1
738
Normal
0.1
123
Tumor
0.1
944
Normal
0.1
534
Normal
0.0
258
Normal
0.0
778
Normal
0.0
516
Normal
0.0
914
Normal
0.0
756
Normal
0.0
376
Normal
0.0
648
Normal
0.0
1042
Normal
0.0
938
Normal
0.0
112
Tumor
0.0
514
Normal
0.0
777
Tumor
0.0
518
Normal
0.0
136
Normal
0.0
913
Tumor
0.0
721
Tumor
0.0
161
Tumor
0.0
722
Normal
0.0
922
Normal
0.0
422
Normal
0.0
1046
Normal
0.0
484
Normal
0.0
351
Tumor
0.0
424
Normal
0.0
218
Normal
0.0
436
Normal
0.0
125
Tumor
0.0
672
Normal
0.0
686
Normal
0.0
1022
Normal
0.0
142
Normal
0.0
976
Normal
0.0
1014
Normal
0.0
432
Normal
0.0
137
Tumor
0.0
982
Normal
0.0
723
Tumor
0.0
462
Normal
0.0
697
Tumor
0.0
918
Normal
0.0
574
Normal
0.0
666
Normal
0.0
491
Tumor
-0.1
278
Normal
-0.1
921
Tumor
-0.1
1044
Normal
-0.1
861
Tumor
-0.1
114
Normal
-0.1
916
Normal
-0.1
214
Normal
-0.1
818
Normal
-0.1
1028
Normal
-0.1
482
Normal
-0.1
314
Normal
-0.1
1021
Tumor
-0.1
978
Normal
-0.1
664
Normal
-0.1
412
Normal
-0.1
162
Normal
-0.1
862
Normal
-0.1
232
Normal
-0.1
851
Tumor
-0.1
222
Normal
-0.1
146
Normal
-0.1
1032
Normal
-0.1
358
Normal
-0.1
357
Tumor
-0.1
433
Tumor
-0.1
277
Tumor
-0.1
951
Tumor
-0.1
662
Normal
-0.1
953
Tumor
-0.1
1045
Tumor
-0.1
356
Normal
-0.1
286
Normal
-0.1
126
Normal
-0.1
434
Normal
-0.1
186
Normal
-0.1
461
Tumor
-0.1
172
Normal
-0.1
744
Normal
-0.1
554
Normal
-0.2
187
Tumor
-0.2
284
Normal
-0.2
124
Normal
-0.2
858
Normal
-0.2
388
Normal
-0.2
481
Tumor
-0.2
185
Tumor
-0.2
813
Tumor
-0.2
493
Tumor
-0.2
881
Tumor
-0.2
468
Normal
-0.2
262
Normal
-0.2
714
Normal
-0.2
444
Normal
-0.2
297
Tumor
-0.2
478
Normal
-0.2
272
Normal
-0.2
312
Normal
-0.2
563
Tumor
-0.2
341
Tumor
-0.2
111
Normal
-0.2
572
Normal
-0.2
956
Normal
-0.2
716
Normal
-0.2
661
Tumor
-0.2
824
Normal
-0.2
354
Normal
-0.2
573
Tumor
-0.2
863
Tumor
-0.2
217
Tumor
-0.2
298
Normal
-0.2
874
Normal
-0.2
472
Normal
-0.2
882
Normal
-0.2
975
Tumor
-0.2
515
Tumor
-0.2
431
Tumor
-0.2
696
Normal
-0.2
865
Tumor
-0.2
817
Tumor
-0.2
228
Normal
-0.2
443
Tumor
-0.2
368
Normal
-0.2
852
Normal
-0.2
878
Normal
-0.3
364
Normal
-0.3
924
Normal
-0.3
497
Tumor
-0.3
816
Normal
-0.3
362
Normal
-0.3
494
Normal
-0.3
523
Tumor
-0.3
451
Tumor
-0.3
966
Normal
-0.3
387
Tumor
-0.3
344
Normal
-0.3
394
Normal
-0.3
814
Normal
-0.3
138
Normal
-0.3
386
Normal
-0.3
464
Normal
-0.3
396
Normal
-0.3
384
Normal
-0.3
536
Normal
-0.3
635
Tumor
-0.3
355
Tumor
-0.3
698
Normal
-0.3
416
Normal
-0.3
617
Tumor
-0.3
188
Normal
-0.3
456
Normal
-0.3
352
Normal
-0.3
192
Normal
-0.3
474
Normal
-0.3
271
Tumor
-0.3
366
Normal
-0.3
955
Tumor
-0.3
445
Tumor
-0.3
864
Normal
-0.3
211
Tumor
-0.4
353
Tumor
-0.4
471
Tumor
-0.4
958
Normal
-0.4
395
Tumor
-0.4
492
Normal
-0.4
538
Normal
-0.4
923
Tumor
-0.4
213
Tumor
-0.4
954
Normal
-0.4
524
Normal
-0.4
385
Tumor
-0.4
268
Normal
-0.4
452
Normal
-0.4
285
Tumor
-0.4
224
Normal
-0.4
498
Normal
-0.4
223
Tumor
-0.4
313
Tumor
-0.4
455
Tumor
-0.4
823
Tumor
-0.4
671
Tumor
-0.4
383
Tumor
-0.4
917
Tumor
-0.4
342
Normal
-0.5
943
Tumor
-0.5
415
Tumor
-0.5
952
Normal
-0.5
527
Tumor
-0.5
392
Normal
-0.5
375
Tumor
-0.5
877
Tumor
-0.5
663
Tumor
-0.5
283
Tumor
-0.5
425
Tumor
-0.5
857
Tumor
-0.6
737
Tumor
-0.6
467
Tumor
-0.6
727
Tumor
-0.6
331
Tumor
-0.7
343
Tumor
-0.7
815
Tumor
-0.7
463
Tumor
-0.8
311
Tumor
-0.9
728
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
