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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S1PR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S1PR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
38.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
881
Tumor
7.6
877
Tumor
7.4
914
Normal
7.3
882
Normal
7.2
911
Tumor
3.7
488
Normal
1.1
536
Normal
1.1
744
Normal
1.1
477
Tumor
1.0
517
Tumor
1.0
481
Tumor
1.0
482
Normal
0.8
342
Normal
0.8
465
Tumor
0.8
741
Tumor
0.8
131
Tumor
0.7
448
Normal
0.7
727
Tumor
0.7
818
Normal
0.7
196
Normal
0.7
227
Tumor
0.7
1043
Tumor
0.7
1045
Tumor
0.6
1044
Normal
0.6
376
Normal
0.6
756
Normal
0.6
515
Tumor
0.6
648
Normal
0.6
1046
Normal
0.6
222
Normal
0.6
366
Normal
0.6
328
Normal
0.5
746
Normal
0.5
388
Normal
0.5
327
Tumor
0.5
146
Normal
0.5
1014
Normal
0.5
128
Normal
0.5
426
Normal
0.5
354
Normal
0.5
824
Normal
0.5
698
Normal
0.5
618
Normal
0.5
283
Tumor
0.5
737
Tumor
0.5
132
Normal
0.5
615
Tumor
0.5
424
Normal
0.5
647
Tumor
0.5
447
Tumor
0.4
666
Normal
0.4
394
Normal
0.4
642
Normal
0.4
466
Normal
0.4
356
Normal
0.4
416
Normal
0.4
664
Normal
0.4
464
Normal
0.4
298
Normal
0.4
223
Tumor
0.4
742
Normal
0.4
278
Normal
0.4
912
Normal
0.4
513
Tumor
0.4
636
Normal
0.4
981
Tumor
0.4
484
Normal
0.4
858
Normal
0.4
568
Normal
0.4
616
Normal
0.4
332
Normal
0.4
358
Normal
0.4
472
Normal
0.4
392
Normal
0.4
628
Normal
0.4
984
Normal
0.4
314
Normal
0.4
627
Tumor
0.4
456
Normal
0.4
944
Normal
0.4
978
Normal
0.4
474
Normal
0.3
516
Normal
0.3
861
Tumor
0.3
412
Normal
0.3
938
Normal
0.3
142
Normal
0.3
462
Normal
0.3
714
Normal
0.3
393
Tumor
0.3
414
Normal
0.3
722
Normal
0.3
352
Normal
0.3
662
Normal
0.3
786
Normal
0.3
468
Normal
0.3
364
Normal
0.3
344
Normal
0.3
341
Tumor
0.3
138
Normal
0.3
423
Tumor
0.3
954
Normal
0.3
535
Tumor
0.3
214
Normal
0.3
982
Normal
0.3
396
Normal
0.3
147
Tumor
0.3
713
Tumor
0.3
436
Normal
0.3
111
Normal
0.3
665
Tumor
0.3
867
Tumor
0.3
363
Tumor
0.3
112
Tumor
0.3
617
Tumor
0.3
686
Normal
0.3
186
Normal
0.3
785
Tumor
0.2
461
Tumor
0.2
572
Normal
0.2
353
Tumor
0.2
964
Normal
0.2
386
Normal
0.2
863
Tumor
0.2
958
Normal
0.2
574
Normal
0.2
1016
Normal
0.2
672
Normal
0.2
145
Tumor
0.2
422
Normal
0.2
641
Tumor
0.2
212
Normal
0.2
136
Normal
0.2
365
Tumor
0.2
697
Tumor
0.2
114
Normal
0.2
362
Normal
0.2
428
Normal
0.2
738
Normal
0.2
564
Normal
0.2
778
Normal
0.2
816
Normal
0.2
852
Normal
0.2
728
Normal
0.2
874
Normal
0.2
285
Tumor
0.2
113
Tumor
0.1
716
Normal
0.1
1013
Tumor
0.1
415
Tumor
0.1
218
Normal
0.1
172
Normal
0.1
411
Tumor
0.1
518
Normal
0.1
514
Normal
0.1
312
Normal
0.1
558
Normal
0.1
878
Normal
0.1
148
Normal
0.1
452
Normal
0.1
868
Normal
0.1
384
Normal
0.1
272
Normal
0.1
956
Normal
0.1
952
Normal
0.1
162
Normal
0.1
498
Normal
0.1
571
Tumor
0.1
696
Normal
0.1
1015
Tumor
0.1
695
Tumor
0.1
478
Normal
0.1
185
Tumor
0.1
977
Tumor
0.1
526
Normal
0.0
431
Tumor
0.0
228
Normal
0.0
232
Normal
0.0
976
Normal
0.0
267
Tumor
0.0
368
Normal
0.0
435
Tumor
0.0
258
Normal
0.0
955
Tumor
0.0
745
Tumor
0.0
471
Tumor
0.0
966
Normal
0.0
755
Tumor
0.0
884
Normal
0.0
361
Tumor
0.0
851
Tumor
0.0
865
Tumor
-0.1
473
Tumor
-0.1
864
Normal
-0.1
188
Normal
-0.1
857
Tumor
-0.1
123
Tumor
-0.1
715
Tumor
-0.1
126
Normal
-0.1
968
Normal
-0.1
434
Normal
-0.1
873
Tumor
-0.1
723
Tumor
-0.1
191
Tumor
-0.1
862
Normal
-0.1
563
Tumor
-0.1
432
Normal
-0.1
127
Tumor
-0.1
866
Normal
-0.1
224
Normal
-0.1
125
Tumor
-0.1
262
Normal
-0.1
221
Tumor
-0.1
141
Tumor
-0.1
277
Tumor
-0.1
446
Normal
-0.1
124
Normal
-0.2
395
Tumor
-0.2
413
Tumor
-0.2
777
Tumor
-0.2
635
Tumor
-0.2
192
Normal
-0.2
524
Normal
-0.2
557
Tumor
-0.2
211
Tumor
-0.2
445
Tumor
-0.2
187
Tumor
-0.2
433
Tumor
-0.2
284
Normal
-0.2
357
Tumor
-0.2
937
Tumor
-0.2
261
Tumor
-0.2
421
Tumor
-0.3
286
Normal
-0.3
313
Tumor
-0.3
965
Tumor
-0.3
171
Tumor
-0.3
195
Tumor
-0.3
883
Tumor
-0.3
387
Tumor
-0.3
975
Tumor
-0.3
391
Tumor
-0.3
573
Tumor
-0.4
213
Tumor
-0.4
525
Tumor
-0.4
823
Tumor
-0.4
137
Tumor
-0.4
814
Normal
-0.4
671
Tumor
-0.4
815
Tumor
-0.4
427
Tumor
-0.4
217
Tumor
-0.4
943
Tumor
-0.4
494
Normal
-0.5
444
Normal
-0.5
963
Tumor
-0.5
271
Tumor
-0.5
161
Tumor
-0.5
721
Tumor
-0.5
663
Tumor
-0.5
268
Normal
-0.5
953
Tumor
-0.5
817
Tumor
-0.5
443
Tumor
-0.5
951
Tumor
-0.5
451
Tumor
-0.6
257
Tumor
-0.6
523
Tumor
-0.6
355
Tumor
-0.6
913
Tumor
-0.6
685
Tumor
-0.6
385
Tumor
-0.6
297
Tumor
-0.6
967
Tumor
-0.7
724
Normal
-0.7
567
Tumor
-0.7
483
Tumor
-0.7
983
Tumor
-0.7
661
Tumor
-0.8
813
Tumor
-0.8
493
Tumor
-0.8
957
Tumor
-0.8
743
Tumor
-0.9
135
Tumor
-0.9
331
Tumor
-0.9
425
Tumor
-0.9
231
Tumor
-0.9
492
Normal
-1.1
383
Tumor
-1.1
467
Tumor
-1.1
455
Tumor
-1.2
351
Tumor
-1.2
375
Tumor
-1.2
491
Tumor
-1.2
311
Tumor
-1.2
367
Tumor
-1.3
463
Tumor
-1.4
343
Tumor
-1.7
497
Tumor
-2.3
487
Tumor
-2.4
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
