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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
232
Normal
2.8
261
Tumor
1.9
573
Tumor
1.8
447
Tumor
1.5
267
Tumor
1.5
258
Normal
1.5
697
Tumor
1.4
268
Normal
1.4
444
Normal
1.4
446
Normal
1.3
272
Normal
1.1
262
Normal
1.1
1025
Tumor
1.0
745
Tumor
1.0
545
Tumor
0.9
436
Normal
0.9
975
Tumor
0.9
968
Normal
0.8
527
Tumor
0.8
445
Tumor
0.8
1016
Normal
0.8
477
Tumor
0.8
514
Normal
0.7
523
Tumor
0.7
746
Normal
0.7
1042
Normal
0.7
257
Tumor
0.6
984
Normal
0.6
1021
Tumor
0.6
434
Normal
0.6
785
Tumor
0.6
574
Normal
0.5
1028
Normal
0.5
474
Normal
0.5
1022
Normal
0.5
721
Tumor
0.4
364
Normal
0.4
526
Normal
0.4
563
Tumor
0.4
368
Normal
0.4
967
Tumor
0.4
536
Normal
0.4
513
Tumor
0.4
1046
Normal
0.4
917
Tumor
0.3
777
Tumor
0.3
518
Normal
0.3
284
Normal
0.3
384
Normal
0.3
224
Normal
0.3
958
Normal
0.3
383
Tumor
0.3
755
Tumor
0.3
966
Normal
0.3
366
Normal
0.3
815
Tumor
0.3
283
Tumor
0.3
448
Normal
0.3
617
Tumor
0.3
1044
Normal
0.3
375
Tumor
0.2
461
Tumor
0.2
223
Tumor
0.2
535
Tumor
0.2
524
Normal
0.2
672
Normal
0.2
698
Normal
0.2
852
Normal
0.2
328
Normal
0.2
467
Tumor
0.2
564
Normal
0.2
356
Normal
0.2
525
Tumor
0.2
1045
Tumor
0.2
1026
Normal
0.2
327
Tumor
0.2
468
Normal
0.2
435
Tumor
0.2
286
Normal
0.2
416
Normal
0.2
515
Tumor
0.2
365
Tumor
0.2
568
Normal
0.2
517
Tumor
0.2
851
Tumor
0.2
516
Normal
0.1
456
Normal
0.1
1043
Tumor
0.1
362
Normal
0.1
538
Normal
0.1
228
Normal
0.1
443
Tumor
0.1
814
Normal
0.1
813
Tumor
0.1
367
Tumor
0.1
212
Normal
0.1
363
Tumor
0.1
361
Tumor
0.1
572
Normal
0.1
412
Normal
0.1
858
Normal
0.1
376
Normal
0.1
466
Normal
0.1
926
Normal
0.1
1032
Normal
0.1
857
Tumor
0.0
528
Normal
0.0
786
Normal
0.0
816
Normal
0.0
231
Tumor
0.0
463
Tumor
0.0
455
Tumor
0.0
957
Tumor
0.0
411
Tumor
0.0
415
Tumor
0.0
571
Tumor
0.0
918
Normal
0.0
1031
Tumor
0.0
817
Tumor
0.0
642
Normal
0.0
473
Tumor
-0.1
567
Tumor
-0.1
965
Tumor
-0.1
695
Tumor
-0.1
432
Normal
-0.1
482
Normal
-0.1
1041
Tumor
-0.1
355
Tumor
-0.1
127
Tumor
-0.1
696
Normal
-0.1
618
Normal
-0.1
464
Normal
-0.1
534
Normal
-0.1
714
Normal
-0.1
666
Normal
-0.1
546
Normal
-0.1
433
Tumor
-0.1
1027
Tumor
-0.1
285
Tumor
-0.1
554
Normal
-0.1
431
Tumor
-0.1
558
Normal
-0.1
824
Normal
-0.1
671
Tumor
-0.1
465
Tumor
-0.1
661
Tumor
-0.1
916
Normal
-0.1
963
Tumor
-0.2
716
Normal
-0.2
722
Normal
-0.2
462
Normal
-0.2
111
Normal
-0.2
452
Normal
-0.2
211
Tumor
-0.2
664
Normal
-0.2
823
Tumor
-0.2
921
Tumor
-0.2
627
Tumor
-0.2
647
Tumor
-0.2
713
Tumor
-0.2
662
Normal
-0.2
648
Normal
-0.2
922
Normal
-0.2
925
Tumor
-0.2
818
Normal
-0.2
981
Tumor
-0.2
481
Tumor
-0.2
778
Normal
-0.3
924
Normal
-0.3
557
Tumor
-0.3
227
Tumor
-0.3
553
Tumor
-0.3
451
Tumor
-0.3
636
Normal
-0.3
497
Tumor
-0.3
756
Normal
-0.3
923
Tumor
-0.3
915
Tumor
-0.4
615
Tumor
-0.4
628
Normal
-0.4
537
Tumor
-0.4
1013
Tumor
-0.4
616
Normal
-0.4
271
Tumor
-0.4
484
Normal
-0.4
635
Tumor
-0.4
663
Tumor
-0.4
715
Tumor
-0.4
978
Normal
-0.5
128
Normal
-0.5
686
Normal
-0.5
126
Normal
-0.5
478
Normal
-0.5
1014
Normal
-0.5
113
Tumor
-0.5
976
Normal
-0.5
977
Tumor
-0.5
494
Normal
-0.6
983
Tumor
-0.6
641
Tumor
-0.6
533
Tumor
-0.6
112
Tumor
-0.6
472
Normal
-0.6
665
Tumor
-0.7
685
Tumor
-0.7
124
Normal
-0.7
487
Tumor
-0.7
498
Normal
-0.7
471
Tumor
-0.8
114
Normal
-0.8
964
Normal
-0.9
125
Tumor
-0.9
491
Tumor
-0.9
492
Normal
-0.9
483
Tumor
-0.9
123
Tumor
-0.9
1015
Tumor
-1.0
493
Tumor
-1.0
488
Normal
-1.2
982
Normal
-1.2
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
741
Tumor
N/A
862
Normal
N/A
742
Normal
N/A
863
Tumor
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
