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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
123.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
122.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
113.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
111.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
106.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
102.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
100.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
99.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
97.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
90.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
76.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
75.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
72.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
68.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
65.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
60.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
58.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
57.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
56.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
56.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
54.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
54.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
53.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
53.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
52.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
52.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
50.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
49.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
48.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
48.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
45.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
43.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
42.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
34.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
33.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
145.1
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
658.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
556.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
488.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
445.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
431.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
397.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
374.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
346.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
329.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
315.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
304.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
288.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
285.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
283.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
275.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
274.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
274.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
265.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
253.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
249.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
244.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
241.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
241.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
238.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
237.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
235.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
228.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
225.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
223.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
222.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
215.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
214.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
213.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
203.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
199.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
198.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
198.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
196.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
192.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
192.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
190.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
187.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
186.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
184.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
184.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
176.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
176.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
175.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
174.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
173.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
171.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
171.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
169.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
167.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
166.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
166.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
165.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
163.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
162.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
162.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
161.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
161.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
160.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
160.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
160.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
159.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
159.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
159.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
159.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
158.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
157.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
156.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
155.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
155.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
155.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
154.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
154.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
153.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
152.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
150.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
150.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
150.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
150.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
148.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
146.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
146.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
146.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
145.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
145.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
144.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
142.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
141.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
141.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
141.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
140.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
139.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
138.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
137.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
137.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
136.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
136.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
136.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
135.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
135.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
134.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
133.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
133.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
131.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
131.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
131.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
131.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
130.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
130.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
129.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
128.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
127.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
127.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
127.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
127.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
127.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
126.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
126.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
126.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
124.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
124.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
123.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
123.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
123.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
123.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
122.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
119.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
118.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
117.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
116.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
116.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
114.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
114.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
113.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
111.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
110.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
109.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
109.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
109.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
108.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
108.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
107.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
106.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
105.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
104.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
103.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
103.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
103.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
103.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
103.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
102.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
102.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
101.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
100.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
99.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
99.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
99.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
98.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
97.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
96.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
96.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
96.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
95.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
95.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
93.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
92.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
92.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
91.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
91.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
91.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
90.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
89.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
88.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
87.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
87.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
86.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
86.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
86.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
86.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
85.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
84.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
83.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
83.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
82.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
81.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
81.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
81.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
80.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
80.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
79.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
79.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
78.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
77.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
77.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
77.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
77.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
76.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
76.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
75.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
71.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
71.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
70.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
70.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
69.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
68.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
68.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
67.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
66.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
65.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
64.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
64.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
63.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
62.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
62.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
61.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
61.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
60.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
60.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
59.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
514
Normal
0.8
484
Normal
0.8
944
Normal
0.7
327
Tumor
0.7
356
Normal
0.7
922
Normal
0.7
1041
Tumor
0.7
926
Normal
0.6
494
Normal
0.6
1032
Normal
0.6
571
Tumor
0.6
864
Normal
0.6
964
Normal
0.6
1014
Normal
0.6
388
Normal
0.6
416
Normal
0.6
1043
Tumor
0.6
473
Tumor
0.6
1022
Normal
0.6
415
Tumor
0.6
328
Normal
0.6
868
Normal
0.5
866
Normal
0.5
958
Normal
0.5
482
Normal
0.5
466
Normal
0.5
722
Normal
0.5
918
Normal
0.5
412
Normal
0.5
526
Normal
0.5
913
Tumor
0.5
648
Normal
0.5
518
Normal
0.5
448
Normal
0.5
616
Normal
0.5
912
Normal
0.5
861
Tumor
0.5
756
Normal
0.5
915
Tumor
0.5
364
Normal
0.5
818
Normal
0.5
1044
Normal
0.5
528
Normal
0.5
714
Normal
0.5
1042
Normal
0.5
954
Normal
0.5
396
Normal
0.5
728
Normal
0.5
212
Normal
0.5
1046
Normal
0.5
982
Normal
0.5
858
Normal
0.5
698
Normal
0.5
516
Normal
0.4
713
Tumor
0.4
1028
Normal
0.4
914
Normal
0.4
231
Tumor
0.4
786
Normal
0.4
564
Normal
0.4
128
Normal
0.4
984
Normal
0.4
462
Normal
0.4
358
Normal
0.4
824
Normal
0.4
488
Normal
0.4
981
Tumor
0.4
558
Normal
0.4
696
Normal
0.4
628
Normal
0.4
916
Normal
0.4
148
Normal
0.4
451
Tumor
0.4
968
Normal
0.4
938
Normal
0.4
738
Normal
0.4
1016
Normal
0.4
278
Normal
0.4
267
Tumor
0.4
232
Normal
0.3
314
Normal
0.3
394
Normal
0.3
924
Normal
0.3
446
Normal
0.3
642
Normal
0.3
284
Normal
0.3
464
Normal
0.3
742
Normal
0.3
716
Normal
0.3
132
Normal
0.3
524
Normal
0.3
572
Normal
0.3
878
Normal
0.3
952
Normal
0.3
258
Normal
0.3
1031
Tumor
0.3
615
Tumor
0.3
468
Normal
0.3
647
Tumor
0.3
636
Normal
0.3
228
Normal
0.3
392
Normal
0.3
474
Normal
0.3
862
Normal
0.3
162
Normal
0.3
214
Normal
0.3
171
Tumor
0.3
664
Normal
0.3
546
Normal
0.3
436
Normal
0.3
723
Tumor
0.3
852
Normal
0.3
778
Normal
0.3
393
Tumor
0.3
376
Normal
0.3
911
Tumor
0.3
352
Normal
0.2
426
Normal
0.2
344
Normal
0.2
816
Normal
0.2
456
Normal
0.2
487
Tumor
0.2
424
Normal
0.2
272
Normal
0.2
111
Normal
0.2
686
Normal
0.2
1026
Normal
0.2
567
Tumor
0.2
1021
Tumor
0.2
867
Tumor
0.2
695
Tumor
0.2
127
Tumor
0.2
956
Normal
0.2
554
Normal
0.2
432
Normal
0.2
568
Normal
0.2
262
Normal
0.2
286
Normal
0.2
955
Tumor
0.2
874
Normal
0.2
114
Normal
0.2
1025
Tumor
0.2
617
Tumor
0.1
414
Normal
0.1
978
Normal
0.1
196
Normal
0.1
666
Normal
0.1
618
Normal
0.1
312
Normal
0.1
785
Tumor
0.1
745
Tumor
0.1
434
Normal
0.1
746
Normal
0.1
557
Tumor
0.1
497
Tumor
0.1
362
Normal
0.1
472
Normal
0.1
662
Normal
0.1
136
Normal
0.1
355
Tumor
0.1
963
Tumor
0.1
222
Normal
0.1
354
Normal
0.1
481
Tumor
0.1
188
Normal
0.1
386
Normal
0.1
112
Tumor
0.1
422
Normal
0.1
172
Normal
0.1
224
Normal
0.1
491
Tumor
0.1
755
Tumor
0.1
715
Tumor
0.1
976
Normal
0.1
478
Normal
0.1
138
Normal
0.1
534
Normal
0.0
113
Tumor
0.0
341
Tumor
0.0
498
Normal
0.0
223
Tumor
0.0
423
Tumor
0.0
145
Tumor
0.0
663
Tumor
0.0
342
Normal
0.0
721
Tumor
0.0
142
Normal
0.0
298
Normal
0.0
452
Normal
0.0
384
Normal
0.0
536
Normal
0.0
574
Normal
0.0
882
Normal
0.0
366
Normal
0.0
873
Tumor
0.0
435
Tumor
0.0
444
Normal
0.0
627
Tumor
-0.1
943
Tumor
-0.1
823
Tumor
-0.1
428
Normal
-0.1
195
Tumor
-0.1
492
Normal
-0.1
525
Tumor
-0.1
477
Tumor
-0.1
1015
Tumor
-0.1
465
Tumor
-0.1
857
Tumor
-0.1
126
Normal
-0.1
538
Normal
-0.1
261
Tumor
-0.1
218
Normal
-0.1
357
Tumor
-0.1
965
Tumor
-0.1
387
Tumor
-0.1
227
Tumor
-0.1
923
Tumor
-0.1
271
Tumor
-0.1
221
Tumor
-0.1
553
Tumor
-0.1
966
Normal
-0.1
411
Tumor
-0.1
146
Normal
-0.1
391
Tumor
-0.1
884
Normal
-0.1
493
Tumor
-0.1
431
Tumor
-0.1
743
Tumor
-0.1
363
Tumor
-0.1
483
Tumor
-0.1
697
Tumor
-0.1
368
Normal
-0.2
977
Tumor
-0.2
1045
Tumor
-0.2
268
Normal
-0.2
517
Tumor
-0.2
641
Tumor
-0.2
672
Normal
-0.2
332
Normal
-0.2
395
Tumor
-0.2
744
Normal
-0.2
445
Tumor
-0.2
124
Normal
-0.2
523
Tumor
-0.2
724
Normal
-0.2
161
Tumor
-0.3
467
Tumor
-0.3
563
Tumor
-0.3
433
Tumor
-0.3
353
Tumor
-0.3
953
Tumor
-0.3
455
Tumor
-0.3
685
Tumor
-0.3
257
Tumor
-0.3
192
Normal
-0.3
741
Tumor
-0.3
447
Tumor
-0.3
863
Tumor
-0.3
865
Tumor
-0.3
285
Tumor
-0.3
975
Tumor
-0.3
877
Tumor
-0.3
277
Tumor
-0.3
881
Tumor
-0.3
814
Normal
-0.3
461
Tumor
-0.3
951
Tumor
-0.3
967
Tumor
-0.3
131
Tumor
-0.3
463
Tumor
-0.4
917
Tumor
-0.4
573
Tumor
-0.4
135
Tumor
-0.4
147
Tumor
-0.4
527
Tumor
-0.4
513
Tumor
-0.4
191
Tumor
-0.4
211
Tumor
-0.4
957
Tumor
-0.4
186
Normal
-0.4
367
Tumor
-0.4
471
Tumor
-0.4
817
Tumor
-0.4
777
Tumor
-0.4
187
Tumor
-0.4
351
Tumor
-0.4
213
Tumor
-0.5
635
Tumor
-0.5
217
Tumor
-0.5
921
Tumor
-0.5
983
Tumor
-0.5
813
Tumor
-0.5
413
Tumor
-0.5
361
Tumor
-0.5
937
Tumor
-0.5
515
Tumor
-0.5
313
Tumor
-0.5
533
Tumor
-0.5
1013
Tumor
-0.6
365
Tumor
-0.6
727
Tumor
-0.6
297
Tumor
-0.6
665
Tumor
-0.6
925
Tumor
-0.6
1027
Tumor
-0.6
815
Tumor
-0.6
851
Tumor
-0.7
737
Tumor
-0.7
375
Tumor
-0.7
537
Tumor
-0.7
427
Tumor
-0.7
185
Tumor
-0.7
141
Tumor
-0.7
443
Tumor
-0.7
545
Tumor
-0.7
283
Tumor
-0.7
331
Tumor
-0.7
883
Tumor
-0.7
311
Tumor
-0.7
385
Tumor
-0.8
123
Tumor
-0.8
661
Tumor
-0.8
421
Tumor
-0.8
383
Tumor
-0.8
425
Tumor
-0.9
137
Tumor
-0.9
343
Tumor
-1.0
535
Tumor
-1.0
671
Tumor
-1.1
125
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
