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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF139 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF139 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
267
Tumor
1.6
641
Tumor
1.2
435
Tumor
1.1
557
Tumor
1.1
231
Tumor
0.9
423
Tumor
0.8
636
Normal
0.7
698
Normal
0.7
911
Tumor
0.7
715
Tumor
0.7
147
Tumor
0.6
314
Normal
0.6
331
Tumor
0.5
1041
Tumor
0.5
938
Normal
0.5
162
Normal
0.5
227
Tumor
0.5
332
Normal
0.5
341
Tumor
0.5
422
Normal
0.5
955
Tumor
0.5
954
Normal
0.5
414
Normal
0.5
191
Tumor
0.4
313
Tumor
0.4
148
Normal
0.4
944
Normal
0.4
436
Normal
0.4
172
Normal
0.4
814
Normal
0.4
477
Tumor
0.4
426
Normal
0.4
858
Normal
0.4
186
Normal
0.4
862
Normal
0.4
427
Tumor
0.4
132
Normal
0.4
823
Tumor
0.4
428
Normal
0.4
424
Normal
0.3
258
Normal
0.3
278
Normal
0.3
866
Normal
0.3
161
Tumor
0.3
171
Tumor
0.3
484
Normal
0.3
914
Normal
0.3
443
Tumor
0.3
493
Tumor
0.3
196
Normal
0.3
483
Tumor
0.3
861
Tumor
0.3
462
Normal
0.3
464
Normal
0.3
342
Normal
0.3
951
Tumor
0.3
864
Normal
0.3
222
Normal
0.3
286
Normal
0.3
466
Normal
0.3
446
Normal
0.3
481
Tumor
0.3
714
Normal
0.3
868
Normal
0.2
221
Tumor
0.2
554
Normal
0.2
187
Tumor
0.2
738
Normal
0.2
616
Normal
0.2
742
Normal
0.2
534
Normal
0.2
533
Tumor
0.2
488
Normal
0.2
452
Normal
0.2
456
Normal
0.2
445
Tumor
0.2
523
Tumor
0.2
564
Normal
0.2
431
Tumor
0.2
867
Tumor
0.2
568
Normal
0.2
298
Normal
0.2
518
Normal
0.2
963
Tumor
0.2
142
Normal
0.2
567
Tumor
0.2
277
Tumor
0.1
432
Normal
0.1
514
Normal
0.1
376
Normal
0.1
112
Tumor
0.1
526
Normal
0.1
232
Normal
0.1
964
Normal
0.1
912
Normal
0.1
976
Normal
0.1
685
Tumor
0.1
952
Normal
0.1
672
Normal
0.1
482
Normal
0.1
468
Normal
0.1
283
Tumor
0.1
818
Normal
0.1
537
Tumor
0.1
366
Normal
0.1
223
Tumor
0.1
925
Tumor
0.1
394
Normal
0.1
135
Tumor
0.1
312
Normal
0.1
618
Normal
0.1
136
Normal
0.1
1016
Normal
0.1
284
Normal
0.1
882
Normal
0.1
874
Normal
0.1
926
Normal
0.0
353
Tumor
0.0
185
Tumor
0.0
127
Tumor
0.0
873
Tumor
0.0
356
Normal
0.0
212
Normal
0.0
491
Tumor
0.0
815
Tumor
0.0
517
Tumor
0.0
351
Tumor
0.0
138
Normal
0.0
786
Normal
0.0
354
Normal
0.0
128
Normal
0.0
884
Normal
0.0
433
Tumor
0.0
756
Normal
0.0
956
Normal
0.0
367
Tumor
0.0
358
Normal
0.0
642
Normal
0.0
745
Tumor
0.0
392
Normal
0.0
228
Normal
0.0
145
Tumor
0.0
1032
Normal
0.0
188
Normal
0.0
817
Tumor
0.0
723
Tumor
0.0
615
Tumor
0.0
857
Tumor
0.0
224
Normal
0.0
824
Normal
0.0
528
Normal
0.0
546
Normal
0.0
271
Tumor
0.0
361
Tumor
-0.1
635
Tumor
-0.1
722
Normal
-0.1
967
Tumor
-0.1
878
Normal
-0.1
572
Normal
-0.1
958
Normal
-0.1
497
Tumor
-0.1
214
Normal
-0.1
146
Normal
-0.1
865
Tumor
-0.1
111
Normal
-0.1
1046
Normal
-0.1
744
Normal
-0.1
261
Tumor
-0.1
574
Normal
-0.1
648
Normal
-0.1
213
Tumor
-0.1
137
Tumor
-0.1
472
Normal
-0.1
778
Normal
-0.1
977
Tumor
-0.1
384
Normal
-0.1
257
Tumor
-0.1
686
Normal
-0.1
388
Normal
-0.1
966
Normal
-0.1
444
Normal
-0.1
463
Tumor
-0.1
978
Normal
-0.1
311
Tumor
-0.1
262
Normal
-0.1
1014
Normal
-0.1
527
Tumor
-0.1
114
Normal
-0.1
524
Normal
-0.2
395
Tumor
-0.2
448
Normal
-0.2
628
Normal
-0.2
515
Tumor
-0.2
494
Normal
-0.2
558
Normal
-0.2
525
Tumor
-0.2
1027
Tumor
-0.2
272
Normal
-0.2
984
Normal
-0.2
696
Normal
-0.2
411
Tumor
-0.2
268
Normal
-0.2
362
Normal
-0.2
716
Normal
-0.2
737
Tumor
-0.2
666
Normal
-0.2
746
Normal
-0.2
364
Normal
-0.2
918
Normal
-0.2
922
Normal
-0.2
421
Tumor
-0.2
375
Tumor
-0.2
368
Normal
-0.2
434
Normal
-0.2
538
Normal
-0.2
917
Tumor
-0.2
943
Tumor
-0.2
1015
Tumor
-0.2
413
Tumor
-0.3
192
Normal
-0.3
937
Tumor
-0.3
743
Tumor
-0.3
968
Normal
-0.3
851
Tumor
-0.3
957
Tumor
-0.3
981
Tumor
-0.3
217
Tumor
-0.3
965
Tumor
-0.3
563
Tumor
-0.3
455
Tumor
-0.3
195
Tumor
-0.3
664
Normal
-0.3
982
Normal
-0.3
412
Normal
-0.3
141
Tumor
-0.3
813
Tumor
-0.3
881
Tumor
-0.3
571
Tumor
-0.3
124
Normal
-0.3
425
Tumor
-0.3
492
Normal
-0.3
297
Tumor
-0.3
877
Tumor
-0.3
396
Normal
-0.3
921
Tumor
-0.3
975
Tumor
-0.3
471
Tumor
-0.3
352
Normal
-0.3
663
Tumor
-0.4
915
Tumor
-0.4
465
Tumor
-0.4
218
Normal
-0.4
365
Tumor
-0.4
385
Tumor
-0.4
662
Normal
-0.4
211
Tumor
-0.4
393
Tumor
-0.4
513
Tumor
-0.4
498
Normal
-0.4
816
Normal
-0.4
473
Tumor
-0.4
328
Normal
-0.4
357
Tumor
-0.4
728
Normal
-0.4
516
Normal
-0.4
416
Normal
-0.4
474
Normal
-0.4
363
Tumor
-0.4
573
Tumor
-0.4
863
Tumor
-0.4
852
Normal
-0.4
343
Tumor
-0.5
671
Tumor
-0.5
697
Tumor
-0.5
777
Tumor
-0.5
131
Tumor
-0.5
724
Normal
-0.5
386
Normal
-0.5
923
Tumor
-0.5
467
Tumor
-0.5
327
Tumor
-0.5
387
Tumor
-0.5
126
Normal
-0.5
924
Normal
-0.5
1025
Tumor
-0.6
478
Normal
-0.6
123
Tumor
-0.6
1022
Normal
-0.6
983
Tumor
-0.6
1026
Normal
-0.6
1044
Normal
-0.6
285
Tumor
-0.6
1013
Tumor
-0.6
451
Tumor
-0.6
1042
Normal
-0.7
916
Normal
-0.7
383
Tumor
-0.7
344
Normal
-0.7
461
Tumor
-0.7
1028
Normal
-0.7
355
Tumor
-0.7
415
Tumor
-0.7
953
Tumor
-0.7
883
Tumor
-0.7
553
Tumor
-0.7
113
Tumor
-0.7
487
Tumor
-0.8
545
Tumor
-0.8
695
Tumor
-0.8
391
Tumor
-0.8
447
Tumor
-0.8
665
Tumor
-0.8
755
Tumor
-0.8
785
Tumor
-0.8
721
Tumor
-0.8
913
Tumor
-0.8
741
Tumor
-0.8
647
Tumor
-0.8
125
Tumor
-0.8
1021
Tumor
-0.9
1043
Tumor
-0.9
713
Tumor
-0.9
617
Tumor
-0.9
661
Tumor
-0.9
627
Tumor
-0.9
536
Normal
-1.0
727
Tumor
-1.0
1045
Tumor
-1.0
535
Tumor
-1.1
1031
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
