HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		8.788
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:49.5 nTPM
GTEx:20.0 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:18.7 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA075540
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA064003
Hippocampal formation mean intensity 8.788
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 3.831
Molecular layer of the dentate gyrus 3.894
Granular dentate gyrus 5.231
CA1 - oriens layer 6.118
CA1 - pyramidal layer 7.483
CA1 - radiatum layer 4.284
CA2 - oriens layer 5.519
CA2 - pyramidal layer 7.570
CA2 - radiatum layer 8.788
CA3 - oriens layer 2.939
CA3 - pyramidal layer 3.807
CA3 - radiatum layer 6.191
Stratum lucidum 3.818
Lacunosum moleculare 3.817
Subiculum 5.445

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 49.5
Sample id Sample description nTPM
Hippocampus
nTPM: 38.8
2529 Female, age 94, left hemisphere 46.4
2621 Female, age 67, right hemisphere 46.3
1911 Female, age 85, right hemisphere 41.9
1855 Male, age 76, left hemisphere 34.0
2148 Female, age 91, left hemisphere 32.3
1898 Male, age 80, left hemisphere 31.8
Dentate gyrus
nTPM: 36.5
2530 Female, age 94, left hemisphere 46.0
2246 Female, age 85, both hemispheres 41.1
2010 Male, age 76, both hemispheres 36.8
2528 Male, age 74, both hemispheres 35.7
2531 Female, age 67, both hemispheres 33.2
1927 Female, age 91, both hemispheres 26.4
Entorhinal gyrus
nTPM: 49.5
2613 Female, age 94, left hemisphere 54.2
2117 Female, age 91, right hemisphere 53.8
1787 Male, age 76, left hemisphere 51.3
2764 Male, age 80, right hemisphere 49.9
2686 Male, age 75, right hemisphere 46.5
1938 Female, age 85, left hemisphere 41.6
Hippocampus, CA1
nTPM: 33.8
2082 Female, age 91, right hemisphere 41.7
2527 Male, age 74, both hemispheres 37.1
1873 Female, age 85, both hemispheres 34.4
2045 Male, age 76, both hemispheres 30.9
2749 Male, age 80, left hemisphere 24.7
Hippocampus, CA2
nTPM: 38.7
2437 Female, age 94, left hemisphere 49.4
2113 Female, age 91, right hemisphere 41.1
1940 Female, age 85, left hemisphere 40.6
2249 Male, age 74, both hemispheres 34.5
1963 Male, age 80, left hemisphere 33.7
1892 Male, age 76, both hemispheres 33.1
Hippocampus, CA3
nTPM: 33.3
1891 Female, age 85, both hemispheres 43.9
2436 Male, age 74, both hemispheres 39.7
1867 Male, age 76, both hemispheres 38.8
2861 Female, age 67, both hemispheres 30.3
2620 Female, age 94, left hemisphere 25.8
2137 Male, age 80, left hemisphere 21.4
Parahippocampal cortex
nTPM: 44.3
2018 Male, age 76, both hemispheres 51.0
2692 Male, age 74, both hemispheres 49.8
2532 Female, age 72, left hemisphere 47.1
2245 Female, age 91, both hemispheres 43.9
2622 Female, age 67, right hemisphere 43.5
2693 Female, age 94, both hemispheres 42.5
1933 Female, age 85, both hemispheres 42.4
1990 Female, age 91, right hemisphere 42.0
1850 Male, age 80, both hemispheres 40.9
2250 Female, age 67, right hemisphere 39.9
Perirhinal gyrus
nTPM: 39.5
2848 Male, age 76, right hemisphere 47.3
1841 Female, age 85, right hemisphere 39.5
2521 Female, age 94, right hemisphere 38.4
1794 Male, age 80, right hemisphere 36.8
1847 Female, age 91, left hemisphere 35.5
Subiculum
nTPM: 49.3
2438 Female, age 94, left hemisphere 61.2
2042 Male, age 76, both hemispheres 56.9
2619 Male, age 74, both hemispheres 53.2
1977 Female, age 85, both hemispheres 46.8
1901 Male, age 80, both hemispheres 44.3
2729 Female, age 91, right hemisphere 33.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 20.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.0
Samples: 197

Max nTPM: 45.2
Min nTPM: 8.0
Std nTPM: 6.2
Median nTPM: 19.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 45.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 39.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 37.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 36.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 35.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 34.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 34.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 32.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 30.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 30.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 29.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.2
FF:10153-102I9 76 years, female 44.6
FF:10169-103B7 60 years, female 21.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 37.3
Pig sample Sample description nTPM
Subiculum
nTPM: 37.3
Samples: 4

Max nTPM: 45.6
Min nTPM: 31.3
Sample A Female 45.6
Sample B Female 34.3
Sample C Male 37.9
Sample D Male 31.3
Dorsal hippocampus
nTPM: 34.4
Samples: 4

Max nTPM: 40.3
Min nTPM: 26.5
Sample A Female 40.3
Sample B Female 37.3
Sample C Male 33.5
Sample D Male 26.5
Entorhinal cortex
nTPM: 28.1
Samples: 4

Max nTPM: 32.8
Min nTPM: 24.5
Sample A Female 32.8
Sample B Female 24.5
Sample C Male 29.3
Sample D Male 25.8
Ventral hippocampus
nTPM: 36.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 29.0
Sample A Female 36.1
Sample B Female 29.0
Sample C Male 42.2
Sample D Male 39.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 18.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 22.9
Min nTPM: 15.9
Sample A Male 15.9
Sample B Male 17.0
Sample C Female 18.9
Sample D Female 22.9
Hippocampal formation
nTPM: 17.0
Samples: 4

Max nTPM: 18.4
Min nTPM: 16.1
Sample A Male 16.2
Sample B Male 18.4
Sample C Female 16.1
Sample D Female 17.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
1776 Antisense, RP_040604_01_B06, Mouse strain C57BL/6J (56 days, male) 1.9
1777 Antisense, RP_040604_01_B06, Mouse strain C57BL/6J (56 days, male) 0.7

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