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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KBTBD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KBTBD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.0
285
Tumor
0.8
497
Tumor
0.7
351
Tumor
0.7
192
Normal
0.7
956
Normal
0.6
445
Tumor
0.6
815
Tumor
0.6
283
Tumor
0.6
224
Normal
0.5
228
Normal
0.5
953
Tumor
0.5
491
Tumor
0.5
671
Tumor
0.5
394
Normal
0.4
573
Tumor
0.4
312
Normal
0.4
391
Tumor
0.4
332
Normal
0.4
665
Tumor
0.4
386
Normal
0.4
213
Tumor
0.4
877
Tumor
0.4
126
Normal
0.4
925
Tumor
0.4
314
Normal
0.4
456
Normal
0.4
113
Tumor
0.4
944
Normal
0.4
185
Tumor
0.4
881
Tumor
0.4
111
Normal
0.3
187
Tumor
0.3
865
Tumor
0.3
911
Tumor
0.3
262
Normal
0.3
563
Tumor
0.3
1041
Tumor
0.3
817
Tumor
0.3
472
Normal
0.3
535
Tumor
0.3
217
Tumor
0.3
468
Normal
0.3
915
Tumor
0.3
938
Normal
0.3
433
Tumor
0.3
983
Tumor
0.3
913
Tumor
0.3
384
Normal
0.3
272
Normal
0.3
672
Normal
0.3
498
Normal
0.3
268
Normal
0.3
161
Tumor
0.3
1031
Tumor
0.2
212
Normal
0.2
341
Tumor
0.2
466
Normal
0.2
188
Normal
0.2
523
Tumor
0.2
1016
Normal
0.2
954
Normal
0.2
355
Tumor
0.2
984
Normal
0.2
464
Normal
0.2
447
Tumor
0.2
286
Normal
0.2
271
Tumor
0.2
851
Tumor
0.2
957
Tumor
0.2
328
Normal
0.2
1027
Tumor
0.2
383
Tumor
0.2
617
Tumor
0.2
364
Normal
0.2
864
Normal
0.2
863
Tumor
0.2
861
Tumor
0.2
814
Normal
0.2
546
Normal
0.2
362
Normal
0.2
428
Normal
0.2
211
Tumor
0.2
114
Normal
0.2
431
Tumor
0.2
557
Tumor
0.2
1014
Normal
0.1
356
Normal
0.1
955
Tumor
0.1
452
Normal
0.1
424
Normal
0.1
513
Tumor
0.1
258
Normal
0.1
388
Normal
0.1
518
Normal
0.1
353
Tumor
0.1
982
Normal
0.1
191
Tumor
0.1
818
Normal
0.1
367
Tumor
0.1
392
Normal
0.1
662
Normal
0.1
223
Tumor
0.1
1043
Tumor
0.1
697
Tumor
0.1
146
Normal
0.1
525
Tumor
0.1
232
Normal
0.1
813
Tumor
0.1
534
Normal
0.1
1013
Tumor
0.1
666
Normal
0.1
416
Normal
0.1
724
Normal
0.1
647
Tumor
0.1
261
Tumor
0.1
873
Tumor
0.1
635
Tumor
0.1
858
Normal
0.1
921
Tumor
0.1
878
Normal
0.1
874
Normal
0.1
857
Tumor
0.1
536
Normal
0.1
284
Normal
0.1
526
Normal
0.1
482
Normal
0.1
528
Normal
0.1
147
Tumor
0.1
952
Normal
0.1
278
Normal
0.1
434
Normal
0.1
354
Normal
0.1
414
Normal
0.1
298
Normal
0.1
883
Tumor
0.1
862
Normal
0.1
443
Tumor
0.1
866
Normal
0.0
494
Normal
0.0
267
Tumor
0.0
396
Normal
0.0
375
Tumor
0.0
343
Tumor
0.0
978
Normal
0.0
824
Normal
0.0
376
Normal
0.0
852
Normal
0.0
661
Tumor
0.0
943
Tumor
0.0
755
Tumor
0.0
884
Normal
0.0
663
Tumor
0.0
425
Tumor
0.0
352
Normal
0.0
912
Normal
0.0
1022
Normal
0.0
516
Normal
0.0
186
Normal
0.0
462
Normal
0.0
514
Normal
0.0
448
Normal
0.0
481
Tumor
0.0
478
Normal
0.0
713
Tumor
0.0
981
Tumor
0.0
415
Tumor
0.0
172
Normal
0.0
868
Normal
0.0
1028
Normal
0.0
393
Tumor
0.0
538
Normal
0.0
636
Normal
0.0
435
Tumor
0.0
616
Normal
0.0
412
Normal
0.0
716
Normal
0.0
1045
Tumor
0.0
488
Normal
0.0
926
Normal
0.0
363
Tumor
0.0
785
Tumor
0.0
148
Normal
0.0
545
Tumor
0.0
722
Normal
0.0
426
Normal
0.0
1021
Tumor
0.0
628
Normal
0.0
975
Tumor
0.0
132
Normal
0.0
1032
Normal
0.0
756
Normal
0.0
648
Normal
0.0
413
Tumor
-0.1
627
Tumor
-0.1
882
Normal
-0.1
816
Normal
-0.1
685
Tumor
-0.1
618
Normal
-0.1
136
Normal
-0.1
737
Tumor
-0.1
517
Tumor
-0.1
642
Normal
-0.1
162
Normal
-0.1
124
Normal
-0.1
924
Normal
-0.1
696
Normal
-0.1
917
Tumor
-0.1
567
Tumor
-0.1
778
Normal
-0.1
914
Normal
-0.1
916
Normal
-0.1
366
Normal
-0.1
698
Normal
-0.1
455
Tumor
-0.1
137
Tumor
-0.1
214
Normal
-0.1
727
Tumor
-0.1
695
Tumor
-0.1
918
Normal
-0.1
231
Tumor
-0.1
331
Tumor
-0.1
721
Tumor
-0.1
615
Tumor
-0.1
463
Tumor
-0.1
742
Normal
-0.1
1042
Normal
-0.1
492
Normal
-0.1
664
Normal
-0.1
923
Tumor
-0.1
467
Tumor
-0.1
365
Tumor
-0.1
524
Normal
-0.1
715
Tumor
-0.1
131
Tumor
-0.1
227
Tumor
-0.1
745
Tumor
-0.1
738
Normal
-0.1
558
Normal
-0.1
128
Normal
-0.1
746
Normal
-0.1
142
Normal
-0.1
744
Normal
-0.1
527
Tumor
-0.1
1044
Normal
-0.1
823
Tumor
-0.1
571
Tumor
-0.1
145
Tumor
-0.1
474
Normal
-0.2
867
Tumor
-0.2
195
Tumor
-0.2
714
Normal
-0.2
395
Tumor
-0.2
344
Normal
-0.2
465
Tumor
-0.2
125
Tumor
-0.2
422
Normal
-0.2
741
Tumor
-0.2
728
Normal
-0.2
1015
Tumor
-0.2
1026
Normal
-0.2
641
Tumor
-0.2
361
Tumor
-0.2
411
Tumor
-0.2
218
Normal
-0.2
127
Tumor
-0.2
937
Tumor
-0.2
686
Normal
-0.2
444
Normal
-0.2
977
Tumor
-0.2
196
Normal
-0.2
222
Normal
-0.2
138
Normal
-0.2
966
Normal
-0.2
483
Tumor
-0.2
387
Tumor
-0.2
786
Normal
-0.2
123
Tumor
-0.2
421
Tumor
-0.2
358
Normal
-0.2
221
Tumor
-0.2
327
Tumor
-0.2
427
Tumor
-0.2
777
Tumor
-0.2
574
Normal
-0.2
493
Tumor
-0.2
171
Tumor
-0.2
368
Normal
-0.2
451
Tumor
-0.3
112
Tumor
-0.3
257
Tumor
-0.3
967
Tumor
-0.3
723
Tumor
-0.3
554
Normal
-0.3
1046
Normal
-0.3
965
Tumor
-0.3
922
Normal
-0.3
572
Normal
-0.3
515
Tumor
-0.3
432
Normal
-0.3
963
Tumor
-0.3
487
Tumor
-0.3
951
Tumor
-0.3
553
Tumor
-0.3
342
Normal
-0.3
564
Normal
-0.3
423
Tumor
-0.3
484
Normal
-0.3
976
Normal
-0.4
357
Tumor
-0.4
533
Tumor
-0.4
446
Normal
-0.4
568
Normal
-0.4
141
Tumor
-0.4
1025
Tumor
-0.4
968
Normal
-0.4
135
Tumor
-0.5
436
Normal
-0.5
311
Tumor
-0.5
537
Tumor
-0.5
958
Normal
-0.5
964
Normal
-0.5
461
Tumor
-0.5
385
Tumor
-0.5
297
Tumor
-0.5
313
Tumor
-0.5
277
Tumor
-0.7
471
Tumor
-0.7
473
Tumor
-0.7
477
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
