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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HTRA3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
70.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
45.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HTRA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
112.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
36.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
2.1
355
Tumor
1.8
535
Tumor
1.3
697
Tumor
1.3
817
Tumor
1.1
546
Normal
1.0
883
Tumor
0.9
863
Tumor
0.9
925
Tumor
0.9
534
Normal
0.9
685
Tumor
0.8
823
Tumor
0.8
513
Tumor
0.8
383
Tumor
0.8
873
Tumor
0.8
665
Tumor
0.8
867
Tumor
0.7
1027
Tumor
0.7
125
Tumor
0.7
1041
Tumor
0.7
375
Tumor
0.7
211
Tumor
0.7
944
Normal
0.7
953
Tumor
0.6
635
Tumor
0.6
695
Tumor
0.6
563
Tumor
0.6
224
Normal
0.6
912
Normal
0.6
554
Normal
0.6
641
Tumor
0.6
956
Normal
0.6
528
Normal
0.6
815
Tumor
0.6
332
Normal
0.5
862
Normal
0.5
722
Normal
0.5
868
Normal
0.5
185
Tumor
0.5
314
Normal
0.5
955
Tumor
0.5
298
Normal
0.5
187
Tumor
0.5
714
Normal
0.5
473
Tumor
0.4
223
Tumor
0.4
615
Tumor
0.4
671
Tumor
0.4
864
Normal
0.4
938
Normal
0.4
421
Tumor
0.4
354
Normal
0.4
384
Normal
0.4
937
Tumor
0.4
342
Normal
0.4
964
Normal
0.4
967
Tumor
0.4
358
Normal
0.4
572
Normal
0.4
627
Tumor
0.4
982
Normal
0.4
616
Normal
0.3
715
Tumor
0.3
866
Normal
0.3
1015
Tumor
0.3
283
Tumor
0.3
482
Normal
0.3
573
Tumor
0.3
361
Tumor
0.3
881
Tumor
0.3
376
Normal
0.3
636
Normal
0.3
696
Normal
0.3
471
Tumor
0.3
713
Tumor
0.3
477
Tumor
0.3
884
Normal
0.3
172
Normal
0.3
344
Normal
0.3
365
Tumor
0.3
463
Tumor
0.3
1042
Normal
0.3
952
Normal
0.3
191
Tumor
0.3
192
Normal
0.3
814
Normal
0.3
813
Tumor
0.3
981
Tumor
0.2
447
Tumor
0.2
137
Tumor
0.2
366
Normal
0.2
557
Tumor
0.2
648
Normal
0.2
221
Tumor
0.2
135
Tumor
0.2
1026
Normal
0.2
145
Tumor
0.2
132
Normal
0.2
483
Tumor
0.2
488
Normal
0.2
356
Normal
0.2
363
Tumor
0.2
861
Tumor
0.2
297
Tumor
0.2
954
Normal
0.2
186
Normal
0.2
923
Tumor
0.2
915
Tumor
0.2
161
Tumor
0.2
1032
Normal
0.2
851
Tumor
0.2
162
Normal
0.2
391
Tumor
0.2
564
Normal
0.2
228
Normal
0.2
362
Normal
0.2
921
Tumor
0.2
352
Normal
0.2
924
Normal
0.2
492
Normal
0.1
196
Normal
0.1
218
Normal
0.1
452
Normal
0.1
984
Normal
0.1
331
Tumor
0.1
148
Normal
0.1
672
Normal
0.1
721
Tumor
0.1
568
Normal
0.1
367
Tumor
0.1
464
Normal
0.1
874
Normal
0.1
278
Normal
0.1
618
Normal
0.1
818
Normal
0.1
538
Normal
0.1
727
Tumor
0.1
142
Normal
0.1
497
Tumor
0.1
222
Normal
0.1
141
Tumor
0.1
368
Normal
0.1
571
Tumor
0.1
882
Normal
0.1
976
Normal
0.1
472
Normal
0.1
456
Normal
0.1
498
Normal
0.1
553
Tumor
0.1
478
Normal
0.1
387
Tumor
0.1
642
Normal
0.1
958
Normal
0.1
328
Normal
0.1
444
Normal
0.1
567
Tumor
0.1
491
Tumor
0.1
686
Normal
0.0
1025
Tumor
0.0
1013
Tumor
0.0
1014
Normal
0.0
737
Tumor
0.0
277
Tumor
0.0
227
Tumor
0.0
716
Normal
0.0
857
Tumor
0.0
425
Tumor
0.0
738
Normal
0.0
357
Tumor
0.0
127
Tumor
0.0
138
Normal
0.0
666
Normal
0.0
217
Tumor
0.0
664
Normal
0.0
436
Normal
0.0
214
Normal
0.0
481
Tumor
0.0
743
Tumor
0.0
455
Tumor
0.0
978
Normal
0.0
445
Tumor
0.0
1028
Normal
0.0
136
Normal
0.0
128
Normal
0.0
484
Normal
0.0
494
Normal
0.0
662
Normal
0.0
533
Tumor
0.0
428
Normal
0.0
918
Normal
0.0
628
Normal
0.0
1044
Normal
0.0
914
Normal
0.0
124
Normal
0.0
284
Normal
0.0
537
Tumor
0.0
526
Normal
-0.1
574
Normal
-0.1
474
Normal
-0.1
487
Tumor
-0.1
146
Normal
-0.1
385
Tumor
-0.1
426
Normal
-0.1
514
Normal
-0.1
975
Tumor
-0.1
558
Normal
-0.1
451
Tumor
-0.1
1045
Tumor
-0.1
364
Normal
-0.1
393
Tumor
-0.1
113
Tumor
-0.1
698
Normal
-0.1
443
Tumor
-0.1
517
Tumor
-0.1
312
Normal
-0.1
427
Tumor
-0.1
468
Normal
-0.1
1021
Tumor
-0.1
816
Normal
-0.1
518
Normal
-0.1
1016
Normal
-0.1
1031
Tumor
-0.1
434
Normal
-0.1
388
Normal
-0.1
171
Tumor
-0.1
392
Normal
-0.1
746
Normal
-0.1
741
Tumor
-0.1
786
Normal
-0.1
785
Tumor
-0.1
963
Tumor
-0.1
968
Normal
-0.1
742
Normal
-0.1
966
Normal
-0.1
462
Normal
-0.1
516
Normal
-0.1
922
Normal
-0.1
327
Tumor
-0.2
432
Normal
-0.2
414
Normal
-0.2
1022
Normal
-0.2
911
Tumor
-0.2
341
Tumor
-0.2
114
Normal
-0.2
396
Normal
-0.2
913
Tumor
-0.2
286
Normal
-0.2
433
Tumor
-0.2
416
Normal
-0.2
1046
Normal
-0.2
493
Tumor
-0.2
524
Normal
-0.2
431
Tumor
-0.2
852
Normal
-0.2
983
Tumor
-0.2
353
Tumor
-0.2
756
Normal
-0.2
744
Normal
-0.2
111
Normal
-0.2
977
Tumor
-0.2
213
Tumor
-0.2
926
Normal
-0.2
123
Tumor
-0.2
858
Normal
-0.2
878
Normal
-0.2
536
Normal
-0.2
448
Normal
-0.2
728
Normal
-0.2
446
Normal
-0.2
386
Normal
-0.2
412
Normal
-0.2
313
Tumor
-0.2
943
Tumor
-0.2
147
Tumor
-0.2
661
Tumor
-0.2
188
Normal
-0.2
424
Normal
-0.2
394
Normal
-0.3
395
Tumor
-0.3
755
Tumor
-0.3
951
Tumor
-0.3
311
Tumor
-0.3
422
Normal
-0.3
285
Tumor
-0.3
467
Tumor
-0.3
212
Normal
-0.3
435
Tumor
-0.3
112
Tumor
-0.3
195
Tumor
-0.3
461
Tumor
-0.3
723
Tumor
-0.3
131
Tumor
-0.3
745
Tumor
-0.3
865
Tumor
-0.3
423
Tumor
-0.3
411
Tumor
-0.3
917
Tumor
-0.3
724
Normal
-0.3
916
Normal
-0.3
415
Tumor
-0.4
466
Normal
-0.4
824
Normal
-0.4
523
Tumor
-0.4
126
Normal
-0.4
413
Tumor
-0.4
545
Tumor
-0.5
647
Tumor
-0.5
617
Tumor
-0.5
343
Tumor
-0.5
465
Tumor
-0.5
778
Normal
-0.5
525
Tumor
-0.6
663
Tumor
-0.6
957
Tumor
-0.6
351
Tumor
-0.6
777
Tumor
-0.6
965
Tumor
-0.7
515
Tumor
-0.8
527
Tumor
-0.8
1043
Tumor
-1.2
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
