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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHCHD7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
88.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
78.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
64.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
62.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
61.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
60.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
59.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
57.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
57.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
56.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
54.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
51.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
50.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
47.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
41.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
40.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
38.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
32.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHCHD7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.9
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
66.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
64.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
59.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
52.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
50.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
50.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
47.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
2.6
473
Tumor
2.2
1041
Tumor
1.9
1043
Tumor
1.5
231
Tumor
1.5
965
Tumor
1.3
411
Tumor
1.3
171
Tumor
1.3
553
Tumor
1.3
915
Tumor
1.3
1025
Tumor
1.2
1013
Tumor
1.1
867
Tumor
1.0
221
Tumor
0.8
112
Tumor
0.8
715
Tumor
0.7
685
Tumor
0.7
513
Tumor
0.6
375
Tumor
0.6
877
Tumor
0.6
697
Tumor
0.6
232
Normal
0.6
1031
Tumor
0.6
823
Tumor
0.6
1015
Tumor
0.6
525
Tumor
0.6
423
Tumor
0.6
431
Tumor
0.6
641
Tumor
0.6
861
Tumor
0.5
127
Tumor
0.5
123
Tumor
0.5
883
Tumor
0.5
981
Tumor
0.5
865
Tumor
0.5
435
Tumor
0.5
963
Tumor
0.5
967
Tumor
0.4
554
Normal
0.4
161
Tumor
0.4
741
Tumor
0.4
342
Normal
0.4
471
Tumor
0.4
172
Normal
0.4
363
Tumor
0.4
537
Tumor
0.4
977
Tumor
0.4
186
Normal
0.3
145
Tumor
0.3
446
Normal
0.3
452
Normal
0.3
477
Tumor
0.3
344
Normal
0.3
436
Normal
0.3
421
Tumor
0.3
258
Normal
0.3
515
Tumor
0.3
285
Tumor
0.3
128
Normal
0.2
952
Normal
0.2
817
Tumor
0.2
443
Tumor
0.2
937
Tumor
0.2
538
Normal
0.2
743
Tumor
0.2
387
Tumor
0.2
523
Tumor
0.2
114
Normal
0.2
433
Tumor
0.2
227
Tumor
0.2
162
Normal
0.2
518
Normal
0.2
975
Tumor
0.2
214
Normal
0.2
271
Tumor
0.2
742
Normal
0.2
484
Normal
0.2
857
Tumor
0.2
451
Tumor
0.2
461
Tumor
0.1
358
Normal
0.1
272
Normal
0.1
434
Normal
0.1
546
Normal
0.1
137
Tumor
0.1
445
Tumor
0.1
483
Tumor
0.1
516
Normal
0.1
957
Tumor
0.1
185
Tumor
0.1
188
Normal
0.1
745
Tumor
0.1
816
Normal
0.1
878
Normal
0.1
911
Tumor
0.1
132
Normal
0.1
217
Tumor
0.1
138
Normal
0.0
427
Tumor
0.0
851
Tumor
0.0
412
Normal
0.0
147
Tumor
0.0
786
Normal
0.0
136
Normal
0.0
268
Normal
0.0
148
Normal
0.0
746
Normal
0.0
951
Tumor
0.0
385
Tumor
0.0
218
Normal
0.0
124
Normal
0.0
571
Tumor
0.0
723
Tumor
0.0
627
Tumor
0.0
261
Tumor
0.0
474
Normal
0.0
392
Normal
0.0
698
Normal
0.0
955
Tumor
0.0
142
Normal
0.0
497
Tumor
0.0
222
Normal
0.0
422
Normal
0.0
722
Normal
0.0
744
Normal
0.0
125
Tumor
0.0
953
Tumor
0.0
196
Normal
0.0
355
Tumor
0.0
448
Normal
0.0
465
Tumor
0.0
262
Normal
0.0
918
Normal
0.0
426
Normal
-0.1
738
Normal
-0.1
642
Normal
-0.1
466
Normal
-0.1
141
Tumor
-0.1
491
Tumor
-0.1
914
Normal
-0.1
728
Normal
-0.1
492
Normal
-0.1
432
Normal
-0.1
923
Tumor
-0.1
917
Tumor
-0.1
982
Normal
-0.1
328
Normal
-0.1
257
Tumor
-0.1
874
Normal
-0.1
956
Normal
-0.1
428
Normal
-0.1
126
Normal
-0.1
187
Tumor
-0.1
365
Tumor
-0.1
756
Normal
-0.1
567
Tumor
-0.1
813
Tumor
-0.1
416
Normal
-0.1
966
Normal
-0.1
1045
Tumor
-0.2
524
Normal
-0.2
924
Normal
-0.2
111
Normal
-0.2
873
Tumor
-0.2
444
Normal
-0.2
1028
Normal
-0.2
778
Normal
-0.2
534
Normal
-0.2
536
Normal
-0.2
635
Tumor
-0.2
393
Tumor
-0.2
983
Tumor
-0.2
464
Normal
-0.2
514
Normal
-0.2
922
Normal
-0.2
1026
Normal
-0.2
1014
Normal
-0.2
481
Tumor
-0.2
984
Normal
-0.2
618
Normal
-0.2
223
Tumor
-0.2
493
Tumor
-0.2
353
Tumor
-0.2
414
Normal
-0.2
462
Normal
-0.2
535
Tumor
-0.3
527
Tumor
-0.3
354
Normal
-0.3
615
Tumor
-0.3
286
Normal
-0.3
881
Tumor
-0.3
913
Tumor
-0.3
1042
Normal
-0.3
713
Tumor
-0.3
815
Tumor
-0.3
463
Tumor
-0.3
395
Tumor
-0.3
558
Normal
-0.3
533
Tumor
-0.3
724
Normal
-0.3
467
Tumor
-0.3
146
Normal
-0.3
636
Normal
-0.3
191
Tumor
-0.3
361
Tumor
-0.3
526
Normal
-0.3
695
Tumor
-0.3
267
Tumor
-0.3
1022
Normal
-0.3
916
Normal
-0.3
386
Normal
-0.3
755
Tumor
-0.3
1016
Normal
-0.3
195
Tumor
-0.4
224
Normal
-0.4
352
Normal
-0.4
1021
Tumor
-0.4
824
Normal
-0.4
925
Tumor
-0.4
367
Tumor
-0.4
212
Normal
-0.4
785
Tumor
-0.4
814
Normal
-0.4
327
Tumor
-0.4
852
Normal
-0.4
424
Normal
-0.4
228
Normal
-0.4
944
Normal
-0.4
487
Tumor
-0.4
396
Normal
-0.4
488
Normal
-0.4
131
Tumor
-0.4
364
Normal
-0.4
1032
Normal
-0.4
472
Normal
-0.4
456
Normal
-0.4
858
Normal
-0.4
213
Tumor
-0.4
976
Normal
-0.4
391
Tumor
-0.4
388
Normal
-0.4
343
Tumor
-0.4
926
Normal
-0.4
563
Tumor
-0.4
413
Tumor
-0.5
394
Normal
-0.5
572
Normal
-0.5
777
Tumor
-0.5
696
Normal
-0.5
574
Normal
-0.5
415
Tumor
-0.5
211
Tumor
-0.5
455
Tumor
-0.5
737
Tumor
-0.5
568
Normal
-0.5
686
Normal
-0.5
113
Tumor
-0.5
938
Normal
-0.5
921
Tumor
-0.5
468
Normal
-0.5
528
Normal
-0.5
447
Tumor
-0.5
545
Tumor
-0.5
383
Tumor
-0.5
573
Tumor
-0.5
192
Normal
-0.5
968
Normal
-0.5
517
Tumor
-0.5
1046
Normal
-0.5
498
Normal
-0.5
341
Tumor
-0.6
283
Tumor
-0.6
482
Normal
-0.6
943
Tumor
-0.6
284
Normal
-0.6
721
Tumor
-0.6
494
Normal
-0.6
362
Normal
-0.6
868
Normal
-0.6
564
Normal
-0.6
356
Normal
-0.6
357
Tumor
-0.6
351
Tumor
-0.6
135
Tumor
-0.6
1044
Normal
-0.7
714
Normal
-0.7
617
Tumor
-0.7
862
Normal
-0.7
727
Tumor
-0.7
478
Normal
-0.7
628
Normal
-0.7
864
Normal
-0.7
366
Normal
-0.7
978
Normal
-0.7
964
Normal
-0.7
866
Normal
-0.7
376
Normal
-0.8
818
Normal
-0.8
1027
Tumor
-0.8
882
Normal
-0.8
716
Normal
-0.8
425
Tumor
-0.8
954
Normal
-0.9
912
Normal
-0.9
958
Normal
-1.0
616
Normal
-1.0
368
Normal
-1.1
884
Normal
-1.3
863
Tumor
-2.1
384
Normal
-2.4
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
