MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.5 nTPM
HPA Brain:19.1 nTPM
GTEx:33.5 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Mouse:45.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.4
1833 Male, age 53, unknown 18.6
2019 Male, age 18, unknown 18.4
1830 Male, age 51, unknown 17.5
2586 Male, age 75, left hemisphere 16.8
1870 Female, age 42, unknown 16.5
2411 Female, age 72, unknown 16.2
1827 Male, age 72, unknown 15.9
2666 Male, age 74, left hemisphere 15.9
2219 Male, age 76, both hemispheres 15.4
2828 Female, age 72, unknown 12.9
Dorsal raphe nucleus
nTPM: 16.9
1828 Male, age 53, unknown 19.8
2298 Female, age 72, unknown 17.3
2047 Male, age 72, unknown 16.8
2016 Female, age 72, unknown 16.4
2750 Male, age 76, both hemispheres 14.3
Inferior colliculus
nTPM: 19.1
1890 Male, age 53, unknown 19.7
2849 Male, age 72, unknown 19.7
2097 Female, age 72, unknown 19.5
1848 Female, age 42, unknown 17.7
Median raphe nucleus
nTPM: 13.8
2220 Male, age 76, midline 13.8
Periaquaductal grey, anterior
nTPM: 14.8
2502 Female, age 75, unknown 17.9
1795 Male, age 51, unknown 13.4
1947 Male, age 18, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 17.4
1831 Male, age 72, unknown 18.7
1840 Male, age 53, unknown 17.3
2850 Male, age 76, both hemispheres 17.2
2464 Female, age 72, unknown 16.6
Periaquaductal grey, lateral
nTPM: 15.6
2272 Male, age 74, both hemispheres 16.0
2140 Male, age 76, both hemispheres 15.7
2053 Male, age 18, unknown 15.0
Pretectal area
nTPM: 17.0
2407 Male, age 75, both hemispheres 21.4
2007 Male, age 72, unknown 19.0
2273 Male, age 74, both hemispheres 18.9
2316 Male, age 76, right hemisphere 17.6
1817 Female, age 42, unknown 17.4
1815 Male, age 53, unknown 17.0
1944 Female, age 72, unknown 16.1
1816 Male, age 51, unknown 15.2
2825 Male, age 18, unknown 15.1
2224 Female, age 72, unknown 15.0
2667 Female, age 75, unknown 13.9
Red nucleus
nTPM: 16.5
2725 Female, age 75, unknown 19.4
2785 Male, age 18, unknown 18.4
1821 Female, age 72, unknown 18.2
1865 Male, age 51, unknown 17.6
2503 Female, age 72, unknown 16.5
1954 Female, age 42, unknown 16.3
2584 Male, age 75, left hemisphere 16.2
2227 Male, age 72, unknown 15.9
2588 Male, age 74, left hemisphere 15.7
2769 Male, age 72, unknown 14.7
1904 Male, age 53, unknown 14.3
2823 Male, age 76, right hemisphere 14.3
Substantia nigra
nTPM: 17.1
2665 Male, age 74, both hemispheres 19.8
2583 Male, age 75, right hemisphere 18.6
2699 Male, age 18, unknown 17.4
2241 Male, age 72, unknown 17.3
1851 Male, age 51, unknown 17.1
2409 Female, age 72, unknown 17.1
1889 Female, age 72, unknown 16.6
1941 Male, age 53, unknown 16.5
2590 Female, age 75, unknown 15.5
1916 Female, age 42, unknown 15.0
Superior colliculus
nTPM: 16.6
2664 Male, age 75, both hemispheres 20.3
2587 Male, age 74, left hemisphere 18.7
1839 Male, age 51, unknown 18.5
2261 Male, age 18, unknown 16.6
1895 Male, age 76, right hemisphere 16.1
2087 Female, age 72, unknown 15.9
1995 Male, age 72, unknown 15.5
2668 Female, age 75, unknown 15.2
1913 Female, age 42, unknown 14.8
1796 Male, age 53, unknown 14.2
Ventral tegmental area
nTPM: 16.1
2223 Female, age 72, unknown 19.7
1915 Female, age 42, unknown 16.9
2021 Male, age 53, unknown 15.8
2410 Female, age 72, unknown 15.5
1942 Male, age 51, unknown 14.7
2218 Male, age 76, both hemispheres 13.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.5
Samples: 139

Max nTPM: 71.7
Min nTPM: 18.0
Std nTPM: 10.4
Median nTPM: 31.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 71.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 62.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 62.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 57.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 57.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 54.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 54.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 53.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 53.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.2
Samples: 4

Max nTPM: 47.7
Min nTPM: 41.8
Sample A Male 47.7
Sample B Male 41.8
Sample C Female 43.9
Sample D Female 47.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70445664 Antisense, RP_050614_04_C11, Mouse strain C57BL/6J (56 days, male) 0.5

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