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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
93.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
86.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
86.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
81.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
77.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
76.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
75.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
74.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
69.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
68.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
64.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
62.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
61.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
61.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
59.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
58.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
57.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
56.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
56.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
56.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
53.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
53.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
52.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
51.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
50.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
50.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
49.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
48.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
48.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
47.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
45.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
44.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
44.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
41.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
38.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
37.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.9
Number of samples
231
Samples
Sample
Description
TPM
DO23545
0 years, male, NA, stage:2, dead, 570 days
154.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
126.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
116.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
95.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
85.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
82.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
80.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
75.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
74.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
71.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
69.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
69.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
68.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
68.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
66.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
66.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
64.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
64.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
60.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
59.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
59.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
58.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
53.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
53.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
53.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
52.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
52.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
50.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
50.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
49.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
48.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
47.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
46.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
45.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
45.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
43.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
42.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
42.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
41.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
40.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
39.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
38.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
38.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
37.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
37.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
35.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
34.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.9
1013
Tumor
0.9
865
Tumor
0.9
227
Tumor
0.8
353
Tumor
0.8
473
Tumor
0.8
223
Tumor
0.8
745
Tumor
0.8
537
Tumor
0.7
925
Tumor
0.7
517
Tumor
0.7
567
Tumor
0.7
1021
Tumor
0.7
123
Tumor
0.7
147
Tumor
0.7
571
Tumor
0.6
471
Tumor
0.6
363
Tumor
0.6
951
Tumor
0.6
355
Tumor
0.6
523
Tumor
0.6
743
Tumor
0.6
553
Tumor
0.5
231
Tumor
0.5
557
Tumor
0.5
443
Tumor
0.5
641
Tumor
0.5
257
Tumor
0.5
697
Tumor
0.5
1027
Tumor
0.5
617
Tumor
0.4
533
Tumor
0.4
525
Tumor
0.4
1043
Tumor
0.4
957
Tumor
0.4
161
Tumor
0.4
877
Tumor
0.4
285
Tumor
0.3
1025
Tumor
0.3
953
Tumor
0.3
923
Tumor
0.3
313
Tumor
0.3
131
Tumor
0.3
823
Tumor
0.3
331
Tumor
0.3
513
Tumor
0.3
883
Tumor
0.3
385
Tumor
0.3
411
Tumor
0.3
137
Tumor
0.3
967
Tumor
0.3
483
Tumor
0.3
487
Tumor
0.3
211
Tumor
0.3
387
Tumor
0.3
395
Tumor
0.2
851
Tumor
0.2
527
Tumor
0.2
715
Tumor
0.2
375
Tumor
0.2
873
Tumor
0.2
221
Tumor
0.2
695
Tumor
0.2
635
Tumor
0.2
937
Tumor
0.2
497
Tumor
0.2
983
Tumor
0.2
535
Tumor
0.2
573
Tumor
0.2
1031
Tumor
0.2
187
Tumor
0.2
327
Tumor
0.2
815
Tumor
0.2
515
Tumor
0.2
724
Normal
0.1
135
Tumor
0.1
545
Tumor
0.1
755
Tumor
0.1
665
Tumor
0.1
737
Tumor
0.1
431
Tumor
0.1
213
Tumor
0.1
921
Tumor
0.1
817
Tumor
0.1
663
Tumor
0.1
461
Tumor
0.1
145
Tumor
0.1
915
Tumor
0.1
647
Tumor
0.1
493
Tumor
0.1
277
Tumor
0.1
777
Tumor
0.1
261
Tumor
0.1
881
Tumor
0.1
191
Tumor
0.1
413
Tumor
0.0
963
Tumor
0.0
467
Tumor
0.0
393
Tumor
0.0
455
Tumor
0.0
367
Tumor
0.0
713
Tumor
0.0
913
Tumor
0.0
421
Tumor
0.0
491
Tumor
0.0
297
Tumor
0.0
195
Tumor
0.0
383
Tumor
0.0
341
Tumor
0.0
977
Tumor
0.0
1041
Tumor
0.0
447
Tumor
0.0
661
Tumor
0.0
171
Tumor
-0.1
563
Tumor
-0.1
955
Tumor
-0.1
328
Normal
-0.1
427
Tumor
-0.1
685
Tumor
-0.1
212
Normal
-0.1
727
Tumor
-0.1
415
Tumor
-0.1
477
Tumor
-0.1
113
Tumor
-0.1
283
Tumor
-0.1
863
Tumor
-0.1
267
Tumor
-0.1
975
Tumor
-0.1
451
Tumor
-0.1
433
Tumor
-0.1
112
Tumor
-0.1
861
Tumor
-0.1
916
Normal
-0.1
813
Tumor
-0.1
911
Tumor
-0.1
391
Tumor
-0.1
357
Tumor
-0.1
474
Normal
-0.1
351
Tumor
-0.1
185
Tumor
-0.1
416
Normal
-0.1
524
Normal
-0.1
435
Tumor
-0.1
554
Normal
-0.1
361
Tumor
-0.1
217
Tumor
-0.2
518
Normal
-0.2
1045
Tumor
-0.2
1042
Normal
-0.2
981
Tumor
-0.2
867
Tumor
-0.2
127
Tumor
-0.2
516
Normal
-0.2
1028
Normal
-0.2
868
Normal
-0.2
538
Normal
-0.2
536
Normal
-0.2
492
Normal
-0.2
721
Tumor
-0.2
465
Tumor
-0.2
514
Normal
-0.2
918
Normal
-0.2
448
Normal
-0.2
478
Normal
-0.2
311
Tumor
-0.2
966
Normal
-0.2
546
Normal
-0.2
864
Normal
-0.2
528
Normal
-0.2
284
Normal
-0.2
756
Normal
-0.2
874
Normal
-0.2
976
Normal
-0.2
534
Normal
-0.2
964
Normal
-0.2
356
Normal
-0.2
728
Normal
-0.2
224
Normal
-0.2
1026
Normal
-0.2
484
Normal
-0.2
472
Normal
-0.2
228
Normal
-0.2
696
Normal
-0.2
141
Tumor
-0.2
365
Tumor
-0.2
944
Normal
-0.2
1044
Normal
-0.2
1022
Normal
-0.2
866
Normal
-0.2
423
Tumor
-0.2
494
Normal
-0.2
926
Normal
-0.2
286
Normal
-0.2
978
Normal
-0.3
956
Normal
-0.3
271
Tumor
-0.3
364
Normal
-0.3
498
Normal
-0.3
526
Normal
-0.3
922
Normal
-0.3
785
Tumor
-0.3
412
Normal
-0.3
723
Tumor
-0.3
125
Tumor
-0.3
968
Normal
-0.3
924
Normal
-0.3
746
Normal
-0.3
482
Normal
-0.3
558
Normal
-0.3
686
Normal
-0.3
814
Normal
-0.3
778
Normal
-0.3
188
Normal
-0.3
268
Normal
-0.3
738
Normal
-0.3
1032
Normal
-0.3
952
Normal
-0.3
857
Tumor
-0.3
786
Normal
-0.3
982
Normal
-0.3
698
Normal
-0.3
716
Normal
-0.3
852
Normal
-0.3
312
Normal
-0.3
714
Normal
-0.3
627
Tumor
-0.3
462
Normal
-0.3
481
Tumor
-0.3
362
Normal
-0.3
958
Normal
-0.3
722
Normal
-0.3
1014
Normal
-0.3
862
Normal
-0.3
1046
Normal
-0.3
262
Normal
-0.3
425
Tumor
-0.3
434
Normal
-0.3
463
Tumor
-0.3
1016
Normal
-0.3
954
Normal
-0.3
914
Normal
-0.3
444
Normal
-0.3
917
Tumor
-0.3
488
Normal
-0.4
884
Normal
-0.4
272
Normal
-0.4
314
Normal
-0.4
128
Normal
-0.4
386
Normal
-0.4
214
Normal
-0.4
422
Normal
-0.4
466
Normal
-0.4
436
Normal
-0.4
984
Normal
-0.4
232
Normal
-0.4
148
Normal
-0.4
258
Normal
-0.4
142
Normal
-0.4
278
Normal
-0.4
432
Normal
-0.4
572
Normal
-0.4
742
Normal
-0.4
218
Normal
-0.4
138
Normal
-0.4
172
Normal
-0.4
136
Normal
-0.4
943
Tumor
-0.4
414
Normal
-0.4
126
Normal
-0.4
192
Normal
-0.4
878
Normal
-0.4
298
Normal
-0.4
912
Normal
-0.4
938
Normal
-0.4
392
Normal
-0.4
132
Normal
-0.4
816
Normal
-0.4
196
Normal
-0.4
568
Normal
-0.4
662
Normal
-0.4
344
Normal
-0.4
424
Normal
-0.4
428
Normal
-0.4
332
Normal
-0.4
111
Normal
-0.4
882
Normal
-0.4
352
Normal
-0.4
564
Normal
-0.4
114
Normal
-0.4
368
Normal
-0.5
824
Normal
-0.5
452
Normal
-0.5
222
Normal
-0.5
1015
Tumor
-0.5
671
Tumor
-0.5
628
Normal
-0.5
394
Normal
-0.5
366
Normal
-0.5
426
Normal
-0.5
358
Normal
-0.5
162
Normal
-0.5
446
Normal
-0.5
574
Normal
-0.5
388
Normal
-0.5
858
Normal
-0.5
186
Normal
-0.5
468
Normal
-0.5
396
Normal
-0.5
384
Normal
-0.5
616
Normal
-0.5
376
Normal
-0.5
648
Normal
-0.5
342
Normal
-0.5
456
Normal
-0.5
664
Normal
-0.5
124
Normal
-0.6
618
Normal
-0.6
354
Normal
-0.6
146
Normal
-0.6
464
Normal
-0.6
642
Normal
-0.6
744
Normal
-0.6
672
Normal
-0.6
615
Tumor
-0.6
818
Normal
-0.6
741
Tumor
-0.6
666
Normal
-0.6
636
Normal
-0.7
445
Tumor
-0.7
343
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
