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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAT2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.6
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
135.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
127.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
98.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
95.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
89.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
88.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
87.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
86.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
81.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
79.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
78.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
78.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
75.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
74.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
69.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
69.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
68.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
67.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
66.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
65.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
63.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
62.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
61.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
61.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
60.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
60.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
58.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
58.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
57.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
56.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
56.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
55.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
55.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
55.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
55.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
54.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
54.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
53.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
53.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
53.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
53.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
51.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
51.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
49.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
49.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
47.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
46.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
44.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
44.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
43.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
43.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
37.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
1.0
661
Tumor
1.0
1031
Tumor
0.9
647
Tumor
0.8
937
Tumor
0.8
443
Tumor
0.8
755
Tumor
0.7
147
Tumor
0.7
435
Tumor
0.7
477
Tumor
0.7
851
Tumor
0.7
553
Tumor
0.6
262
Normal
0.6
861
Tumor
0.6
434
Normal
0.6
557
Tumor
0.6
367
Tumor
0.6
737
Tumor
0.6
433
Tumor
0.6
536
Normal
0.5
865
Tumor
0.5
221
Tumor
0.5
451
Tumor
0.5
283
Tumor
0.5
1015
Tumor
0.5
217
Tumor
0.5
978
Normal
0.5
727
Tumor
0.4
1043
Tumor
0.4
817
Tumor
0.4
391
Tumor
0.4
127
Tumor
0.4
641
Tumor
0.4
218
Normal
0.4
955
Tumor
0.4
213
Tumor
0.4
416
Normal
0.3
956
Normal
0.3
967
Tumor
0.3
983
Tumor
0.3
721
Tumor
0.3
1044
Normal
0.3
487
Tumor
0.3
966
Normal
0.3
524
Normal
0.3
137
Tumor
0.3
444
Normal
0.3
327
Tumor
0.3
358
Normal
0.3
883
Tumor
0.3
344
Normal
0.3
1045
Tumor
0.3
123
Tumor
0.3
126
Normal
0.2
386
Normal
0.2
571
Tumor
0.2
227
Tumor
0.2
188
Normal
0.2
492
Normal
0.2
141
Tumor
0.2
363
Tumor
0.2
1021
Tumor
0.2
368
Normal
0.2
695
Tumor
0.2
138
Normal
0.2
446
Normal
0.2
396
Normal
0.2
1046
Normal
0.2
111
Normal
0.2
635
Tumor
0.2
814
Normal
0.2
975
Tumor
0.2
916
Normal
0.2
1022
Normal
0.2
1025
Tumor
0.2
448
Normal
0.2
554
Normal
0.2
977
Tumor
0.2
452
Normal
0.2
465
Tumor
0.2
1028
Normal
0.2
873
Tumor
0.2
268
Normal
0.2
261
Tumor
0.2
746
Normal
0.2
431
Tumor
0.2
925
Tumor
0.2
125
Tumor
0.2
921
Tumor
0.2
445
Tumor
0.2
926
Normal
0.2
558
Normal
0.2
361
Tumor
0.2
815
Tumor
0.1
436
Normal
0.1
745
Tumor
0.1
258
Normal
0.1
467
Tumor
0.1
393
Tumor
0.1
128
Normal
0.1
463
Tumor
0.1
415
Tumor
0.1
392
Normal
0.1
636
Normal
0.1
267
Tumor
0.1
286
Normal
0.1
982
Normal
0.1
114
Normal
0.1
364
Normal
0.1
353
Tumor
0.1
957
Tumor
0.1
232
Normal
0.1
195
Tumor
0.1
411
Tumor
0.1
171
Tumor
0.1
214
Normal
0.1
494
Normal
0.1
924
Normal
0.1
277
Tumor
0.1
124
Normal
0.1
425
Tumor
0.1
455
Tumor
0.1
816
Normal
0.1
1026
Normal
0.1
456
Normal
0.1
951
Tumor
0.1
352
Normal
0.1
272
Normal
0.1
112
Tumor
0.1
628
Normal
0.1
383
Tumor
0.1
862
Normal
0.1
432
Normal
0.1
341
Tumor
0.1
662
Normal
0.1
284
Normal
0.1
228
Normal
0.1
666
Normal
0.1
412
Normal
0.1
366
Normal
0.1
413
Tumor
0.1
362
Normal
0.1
186
Normal
0.1
468
Normal
0.1
696
Normal
0.1
723
Tumor
0.1
981
Tumor
0.1
964
Normal
0.1
422
Normal
0.0
914
Normal
0.0
285
Tumor
0.0
778
Normal
0.0
568
Normal
0.0
915
Tumor
0.0
858
Normal
0.0
952
Normal
0.0
365
Tumor
0.0
414
Normal
0.0
852
Normal
0.0
728
Normal
0.0
518
Normal
0.0
526
Normal
0.0
818
Normal
0.0
884
Normal
0.0
447
Tumor
0.0
713
Tumor
0.0
224
Normal
0.0
538
Normal
0.0
498
Normal
0.0
212
Normal
0.0
642
Normal
0.0
185
Tumor
0.0
148
Normal
0.0
196
Normal
0.0
648
Normal
0.0
172
Normal
0.0
533
Tumor
0.0
493
Tumor
0.0
963
Tumor
0.0
343
Tumor
0.0
1016
Normal
0.0
231
Tumor
0.0
132
Normal
0.0
497
Tumor
0.0
663
Tumor
0.0
484
Normal
0.0
672
Normal
0.0
911
Tumor
0.0
421
Tumor
0.0
146
Normal
0.0
535
Tumor
0.0
311
Tumor
0.0
528
Normal
0.0
162
Normal
0.0
355
Tumor
0.0
698
Normal
0.0
954
Normal
0.0
527
Tumor
0.0
738
Normal
0.0
965
Tumor
0.0
1042
Normal
0.0
376
Normal
0.0
466
Normal
0.0
867
Tumor
0.0
984
Normal
0.0
686
Normal
0.0
354
Normal
0.0
271
Tumor
0.0
387
Tumor
0.0
1014
Normal
0.0
136
Normal
0.0
874
Normal
-0.1
917
Tumor
-0.1
813
Tumor
-0.1
918
Normal
-0.1
515
Tumor
-0.1
722
Normal
-0.1
388
Normal
-0.1
428
Normal
-0.1
944
Normal
-0.1
922
Normal
-0.1
488
Normal
-0.1
516
Normal
-0.1
384
Normal
-0.1
824
Normal
-0.1
574
Normal
-0.1
474
Normal
-0.1
563
Tumor
-0.1
741
Tumor
-0.1
478
Normal
-0.1
145
Tumor
-0.1
222
Normal
-0.1
616
Normal
-0.1
426
Normal
-0.1
192
Normal
-0.1
514
Normal
-0.1
958
Normal
-0.1
564
Normal
-0.1
142
Normal
-0.1
423
Tumor
-0.1
161
Tumor
-0.1
191
Tumor
-0.1
618
Normal
-0.1
471
Tumor
-0.1
424
Normal
-0.1
357
Tumor
-0.1
664
Normal
-0.1
187
Tumor
-0.1
211
Tumor
-0.1
342
Normal
-0.1
882
Normal
-0.1
786
Normal
-0.1
857
Tumor
-0.1
356
Normal
-0.1
385
Tumor
-0.1
332
Normal
-0.1
464
Normal
-0.1
742
Normal
-0.1
278
Normal
-0.1
135
Tumor
-0.1
968
Normal
-0.1
617
Tumor
-0.1
298
Normal
-0.1
461
Tumor
-0.2
866
Normal
-0.2
715
Tumor
-0.2
863
Tumor
-0.2
823
Tumor
-0.2
483
Tumor
-0.2
513
Tumor
-0.2
1032
Normal
-0.2
473
Tumor
-0.2
312
Normal
-0.2
878
Normal
-0.2
314
Normal
-0.2
976
Normal
-0.2
938
Normal
-0.2
912
Normal
-0.2
756
Normal
-0.2
546
Normal
-0.2
394
Normal
-0.2
724
Normal
-0.2
462
Normal
-0.2
744
Normal
-0.2
1027
Tumor
-0.2
716
Normal
-0.2
923
Tumor
-0.2
328
Normal
-0.2
517
Tumor
-0.2
257
Tumor
-0.2
868
Normal
-0.2
864
Normal
-0.3
572
Normal
-0.3
881
Tumor
-0.3
714
Normal
-0.3
615
Tumor
-0.3
534
Normal
-0.3
913
Tumor
-0.3
297
Tumor
-0.3
537
Tumor
-0.3
627
Tumor
-0.3
1041
Tumor
-0.3
472
Normal
-0.3
1013
Tumor
-0.3
697
Tumor
-0.3
491
Tumor
-0.3
525
Tumor
-0.4
223
Tumor
-0.4
785
Tumor
-0.4
953
Tumor
-0.4
665
Tumor
-0.4
777
Tumor
-0.4
671
Tumor
-0.4
313
Tumor
-0.4
395
Tumor
-0.5
943
Tumor
-0.5
545
Tumor
-0.5
573
Tumor
-0.5
481
Tumor
-0.6
482
Normal
-0.6
331
Tumor
-0.6
567
Tumor
-0.6
375
Tumor
-0.6
877
Tumor
-0.6
131
Tumor
-0.6
351
Tumor
-0.7
427
Tumor
-0.7
523
Tumor
-0.7
743
Tumor
-1.0
685
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
