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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC30A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
159.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
132.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
82.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
74.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
67.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
61.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
61.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
58.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
58.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
55.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
54.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
53.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
52.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
45.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
44.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
44.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
43.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
42.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
39.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC30A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.5
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
151.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
110.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
78.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
74.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
72.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
70.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
62.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
58.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
57.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
52.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
46.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
45.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
45.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
41.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
38.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
34.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.3
527
Tumor
1.2
737
Tumor
1.2
533
Tumor
1.1
515
Tumor
1.1
863
Tumor
1.0
957
Tumor
0.9
777
Tumor
0.9
861
Tumor
0.9
1041
Tumor
0.9
223
Tumor
0.9
915
Tumor
0.8
1043
Tumor
0.8
977
Tumor
0.8
451
Tumor
0.7
617
Tumor
0.7
187
Tumor
0.7
1027
Tumor
0.7
745
Tumor
0.6
461
Tumor
0.6
851
Tumor
0.6
865
Tumor
0.6
557
Tumor
0.5
357
Tumor
0.5
755
Tumor
0.5
218
Normal
0.5
785
Tumor
0.5
685
Tumor
0.5
481
Tumor
0.5
327
Tumor
0.5
981
Tumor
0.5
724
Normal
0.5
937
Tumor
0.5
415
Tumor
0.5
554
Normal
0.4
553
Tumor
0.4
1046
Normal
0.4
911
Tumor
0.4
955
Tumor
0.4
964
Normal
0.4
361
Tumor
0.4
221
Tumor
0.4
615
Tumor
0.4
471
Tumor
0.4
518
Normal
0.4
393
Tumor
0.4
477
Tumor
0.4
376
Normal
0.4
314
Normal
0.4
1025
Tumor
0.3
952
Normal
0.3
426
Normal
0.3
365
Tumor
0.3
286
Normal
0.3
966
Normal
0.3
433
Tumor
0.3
746
Normal
0.3
298
Normal
0.3
1026
Normal
0.3
715
Tumor
0.3
474
Normal
0.3
482
Normal
0.3
191
Tumor
0.3
363
Tumor
0.3
231
Tumor
0.3
921
Tumor
0.3
473
Tumor
0.3
723
Tumor
0.3
738
Normal
0.3
1013
Tumor
0.3
358
Normal
0.3
1015
Tumor
0.3
714
Normal
0.3
862
Normal
0.3
422
Normal
0.3
488
Normal
0.3
976
Normal
0.3
472
Normal
0.3
342
Normal
0.3
353
Tumor
0.3
526
Normal
0.3
568
Normal
0.2
222
Normal
0.2
436
Normal
0.2
696
Normal
0.2
564
Normal
0.2
728
Normal
0.2
954
Normal
0.2
344
Normal
0.2
484
Normal
0.2
665
Tumor
0.2
445
Tumor
0.2
462
Normal
0.2
968
Normal
0.2
938
Normal
0.2
951
Tumor
0.2
1031
Tumor
0.2
975
Tumor
0.2
147
Tumor
0.2
756
Normal
0.2
434
Normal
0.2
858
Normal
0.2
171
Tumor
0.2
534
Normal
0.2
1022
Normal
0.2
123
Tumor
0.2
428
Normal
0.2
722
Normal
0.2
414
Normal
0.2
111
Normal
0.2
958
Normal
0.2
742
Normal
0.2
922
Normal
0.2
448
Normal
0.2
867
Tumor
0.2
1044
Normal
0.2
528
Normal
0.2
563
Tumor
0.2
257
Tumor
0.2
924
Normal
0.2
412
Normal
0.2
1045
Tumor
0.2
857
Tumor
0.2
786
Normal
0.2
873
Tumor
0.2
136
Normal
0.2
141
Tumor
0.2
424
Normal
0.2
514
Normal
0.2
824
Normal
0.2
686
Normal
0.2
778
Normal
0.2
228
Normal
0.1
217
Tumor
0.1
926
Normal
0.1
494
Normal
0.1
368
Normal
0.1
332
Normal
0.1
258
Normal
0.1
145
Tumor
0.1
114
Normal
0.1
132
Normal
0.1
635
Tumor
0.1
944
Normal
0.1
818
Normal
0.1
196
Normal
0.1
524
Normal
0.1
558
Normal
0.1
864
Normal
0.1
513
Tumor
0.1
572
Normal
0.1
618
Normal
0.1
446
Normal
0.1
636
Normal
0.1
878
Normal
0.1
884
Normal
0.1
648
Normal
0.1
125
Tumor
0.1
456
Normal
0.1
214
Normal
0.1
538
Normal
0.1
195
Tumor
0.1
432
Normal
0.1
467
Tumor
0.1
912
Normal
0.1
1028
Normal
0.1
916
Normal
0.1
131
Tumor
0.1
232
Normal
0.1
546
Normal
0.1
642
Normal
0.1
574
Normal
0.1
967
Tumor
0.1
721
Tumor
0.1
664
Normal
0.1
816
Normal
0.1
431
Tumor
0.1
492
Normal
0.1
866
Normal
0.1
213
Tumor
0.1
128
Normal
0.1
411
Tumor
0.1
443
Tumor
0.1
362
Normal
0.1
148
Normal
0.0
464
Normal
0.0
616
Normal
0.0
262
Normal
0.0
112
Tumor
0.0
137
Tumor
0.0
354
Normal
0.0
716
Normal
0.0
882
Normal
0.0
328
Normal
0.0
1016
Normal
0.0
277
Tumor
0.0
498
Normal
0.0
284
Normal
0.0
914
Normal
0.0
261
Tumor
0.0
537
Tumor
0.0
267
Tumor
0.0
1021
Tumor
0.0
698
Normal
0.0
341
Tumor
0.0
278
Normal
0.0
268
Normal
0.0
142
Normal
0.0
982
Normal
0.0
978
Normal
0.0
425
Tumor
0.0
744
Normal
0.0
627
Tumor
0.0
956
Normal
0.0
416
Normal
0.0
113
Tumor
0.0
1014
Normal
0.0
1032
Normal
0.0
356
Normal
0.0
146
Normal
0.0
224
Normal
0.0
666
Normal
0.0
138
Normal
0.0
1042
Normal
0.0
162
Normal
0.0
727
Tumor
0.0
965
Tumor
0.0
943
Tumor
0.0
272
Normal
0.0
874
Normal
0.0
984
Normal
0.0
468
Normal
0.0
963
Tumor
0.0
212
Normal
0.0
466
Normal
-0.1
953
Tumor
-0.1
913
Tumor
-0.1
452
Normal
-0.1
868
Normal
-0.1
364
Normal
-0.1
877
Tumor
-0.1
516
Normal
-0.1
186
Normal
-0.1
647
Tumor
-0.1
918
Normal
-0.1
455
Tumor
-0.1
493
Tumor
-0.1
421
Tumor
-0.1
391
Tumor
-0.1
567
Tumor
-0.1
366
Normal
-0.1
312
Normal
-0.1
517
Tumor
-0.1
741
Tumor
-0.1
423
Tumor
-0.1
478
Normal
-0.1
852
Normal
-0.1
313
Tumor
-0.1
925
Tumor
-0.1
813
Tumor
-0.1
124
Normal
-0.1
352
Normal
-0.1
384
Normal
-0.1
271
Tumor
-0.1
227
Tumor
-0.1
628
Normal
-0.2
483
Tumor
-0.2
394
Normal
-0.2
396
Normal
-0.2
413
Tumor
-0.2
172
Normal
-0.2
297
Tumor
-0.2
444
Normal
-0.2
192
Normal
-0.2
814
Normal
-0.2
491
Tumor
-0.2
663
Tumor
-0.2
392
Normal
-0.2
388
Normal
-0.2
126
Normal
-0.2
672
Normal
-0.2
713
Tumor
-0.2
536
Normal
-0.2
188
Normal
-0.3
525
Tumor
-0.3
386
Normal
-0.3
497
Tumor
-0.3
881
Tumor
-0.3
573
Tumor
-0.3
311
Tumor
-0.3
387
Tumor
-0.3
465
Tumor
-0.3
331
Tumor
-0.3
883
Tumor
-0.3
343
Tumor
-0.3
127
Tumor
-0.3
662
Normal
-0.4
923
Tumor
-0.4
185
Tumor
-0.4
161
Tumor
-0.4
545
Tumor
-0.4
375
Tumor
-0.4
697
Tumor
-0.4
447
Tumor
-0.4
571
Tumor
-0.4
487
Tumor
-0.5
283
Tumor
-0.5
823
Tumor
-0.5
463
Tumor
-0.5
817
Tumor
-0.5
383
Tumor
-0.5
917
Tumor
-0.5
135
Tumor
-0.5
671
Tumor
-0.5
395
Tumor
-0.5
351
Tumor
-0.5
641
Tumor
-0.6
285
Tumor
-0.6
355
Tumor
-0.6
983
Tumor
-0.6
815
Tumor
-0.6
427
Tumor
-0.6
435
Tumor
-0.7
743
Tumor
-0.7
535
Tumor
-0.7
211
Tumor
-0.7
367
Tumor
-0.8
695
Tumor
-0.8
385
Tumor
-0.9
661
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.