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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCAF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
2.1
953
Tumor
1.8
267
Tumor
1.6
357
Tumor
1.4
137
Tumor
1.3
113
Tumor
1.3
571
Tumor
1.3
383
Tumor
1.3
481
Tumor
1.0
355
Tumor
1.0
195
Tumor
1.0
257
Tumor
1.0
213
Tumor
0.9
482
Normal
0.9
423
Tumor
0.9
661
Tumor
0.9
427
Tumor
0.8
923
Tumor
0.8
533
Tumor
0.7
813
Tumor
0.7
375
Tumor
0.6
361
Tumor
0.6
461
Tumor
0.5
147
Tumor
0.5
917
Tumor
0.5
223
Tumor
0.4
527
Tumor
0.4
724
Normal
0.4
327
Tumor
0.4
128
Normal
0.4
217
Tumor
0.4
468
Normal
0.3
467
Tumor
0.3
135
Tumor
0.3
161
Tumor
0.3
384
Normal
0.3
332
Normal
0.3
188
Normal
0.3
212
Normal
0.2
358
Normal
0.2
283
Tumor
0.2
434
Normal
0.2
426
Normal
0.2
224
Normal
0.2
191
Tumor
0.2
214
Normal
0.2
617
Tumor
0.2
445
Tumor
0.2
376
Normal
0.2
343
Tumor
0.2
1013
Tumor
0.2
488
Normal
0.2
126
Normal
0.1
628
Normal
0.1
421
Tumor
0.1
192
Normal
0.1
472
Normal
0.1
976
Normal
0.1
913
Tumor
0.1
462
Normal
0.1
492
Normal
0.1
314
Normal
0.1
311
Tumor
0.1
465
Tumor
0.1
284
Normal
0.1
312
Normal
0.1
1042
Normal
0.1
428
Normal
0.1
145
Tumor
0.1
425
Tumor
0.1
756
Normal
0.1
884
Normal
0.1
478
Normal
0.0
362
Normal
0.0
424
Normal
0.0
513
Tumor
0.0
716
Normal
0.0
514
Normal
0.0
272
Normal
0.0
196
Normal
0.0
414
Normal
0.0
464
Normal
0.0
672
Normal
0.0
353
Tumor
0.0
978
Normal
0.0
422
Normal
0.0
966
Normal
0.0
882
Normal
0.0
211
Tumor
0.0
662
Normal
0.0
912
Normal
0.0
342
Normal
0.0
138
Normal
0.0
366
Normal
0.0
432
Normal
0.0
572
Normal
0.0
387
Tumor
0.0
443
Tumor
0.0
568
Normal
0.0
227
Tumor
0.0
416
Normal
-0.1
1031
Tumor
-0.1
786
Normal
-0.1
392
Normal
-0.1
573
Tumor
-0.1
925
Tumor
-0.1
916
Normal
-0.1
286
Normal
-0.1
944
Normal
-0.1
328
Normal
-0.1
146
Normal
-0.1
745
Tumor
-0.1
451
Tumor
-0.1
564
Normal
-0.1
938
Normal
-0.1
352
Normal
-0.1
463
Tumor
-0.1
368
Normal
-0.1
356
Normal
-0.1
448
Normal
-0.1
132
Normal
-0.1
574
Normal
-0.1
222
Normal
-0.1
474
Normal
-0.1
142
Normal
-0.1
148
Normal
-0.1
981
Tumor
-0.1
567
Tumor
-0.1
755
Tumor
-0.1
713
Tumor
-0.1
914
Normal
-0.1
185
Tumor
-0.1
636
Normal
-0.1
963
Tumor
-0.1
232
Normal
-0.1
278
Normal
-0.2
268
Normal
-0.2
364
Normal
-0.2
413
Tumor
-0.2
863
Tumor
-0.2
665
Tumor
-0.2
258
Normal
-0.2
354
Normal
-0.2
262
Normal
-0.2
473
Tumor
-0.2
627
Tumor
-0.2
298
Normal
-0.2
386
Normal
-0.2
285
Tumor
-0.2
954
Normal
-0.2
814
Normal
-0.2
186
Normal
-0.2
1016
Normal
-0.2
922
Normal
-0.2
721
Tumor
-0.2
723
Tumor
-0.2
861
Tumor
-0.3
172
Normal
-0.3
563
Tumor
-0.3
1014
Normal
-0.3
1015
Tumor
-0.3
1043
Tumor
-0.3
466
Normal
-0.3
878
Normal
-0.3
477
Tumor
-0.3
937
Tumor
-0.3
228
Normal
-0.3
526
Normal
-0.3
447
Tumor
-0.3
778
Normal
-0.3
558
Normal
-0.3
446
Normal
-0.3
498
Normal
-0.3
231
Tumor
-0.3
483
Tumor
-0.3
411
Tumor
-0.3
141
Tumor
-0.3
722
Normal
-0.3
385
Tumor
-0.3
926
Normal
-0.3
344
Normal
-0.3
918
Normal
-0.3
697
Tumor
-0.3
524
Normal
-0.3
341
Tumor
-0.3
456
Normal
-0.4
956
Normal
-0.4
744
Normal
-0.4
868
Normal
-0.4
395
Tumor
-0.4
484
Normal
-0.4
136
Normal
-0.4
943
Tumor
-0.4
618
Normal
-0.4
535
Tumor
-0.4
431
Tumor
-0.4
686
Normal
-0.4
444
Normal
-0.4
433
Tumor
-0.4
436
Normal
-0.4
491
Tumor
-0.4
388
Normal
-0.4
518
Normal
-0.4
415
Tumor
-0.4
867
Tumor
-0.4
685
Tumor
-0.4
218
Normal
-0.4
964
Normal
-0.4
698
Normal
-0.4
866
Normal
-0.4
864
Normal
-0.5
742
Normal
-0.5
874
Normal
-0.5
1046
Normal
-0.5
297
Tumor
-0.5
738
Normal
-0.5
671
Tumor
-0.5
162
Normal
-0.5
187
Tumor
-0.5
1044
Normal
-0.5
525
Tumor
-0.5
696
Normal
-0.5
127
Tumor
-0.5
642
Normal
-0.5
455
Tumor
-0.5
517
Tumor
-0.5
881
Tumor
-0.5
983
Tumor
-0.5
546
Normal
-0.6
862
Normal
-0.6
865
Tumor
-0.6
741
Tumor
-0.6
412
Normal
-0.6
746
Normal
-0.6
365
Tumor
-0.6
1027
Tumor
-0.6
911
Tumor
-0.6
873
Tumor
-0.6
737
Tumor
-0.6
396
Normal
-0.6
1032
Normal
-0.6
494
Normal
-0.6
367
Tumor
-0.6
313
Tumor
-0.6
528
Normal
-0.6
435
Tumor
-0.6
785
Tumor
-0.6
975
Tumor
-0.6
538
Normal
-0.6
221
Tumor
-0.6
877
Tumor
-0.6
391
Tumor
-0.6
351
Tumor
-0.6
968
Normal
-0.6
728
Normal
-0.6
883
Tumor
-0.7
1026
Normal
-0.7
554
Normal
-0.7
982
Normal
-0.7
967
Tumor
-0.7
271
Tumor
-0.7
534
Normal
-0.7
648
Normal
-0.7
666
Normal
-0.7
261
Tumor
-0.7
536
Normal
-0.7
394
Normal
-0.7
924
Normal
-0.7
664
Normal
-0.7
471
Tumor
-0.7
915
Tumor
-0.7
487
Tumor
-0.7
452
Normal
-0.7
616
Normal
-0.7
363
Tumor
-0.7
727
Tumor
-0.8
1022
Normal
-0.8
493
Tumor
-0.8
516
Normal
-0.8
714
Normal
-0.8
557
Tumor
-0.8
1028
Normal
-0.8
615
Tumor
-0.8
647
Tumor
-0.8
537
Tumor
-0.8
984
Normal
-0.8
952
Normal
-0.9
958
Normal
-0.9
695
Tumor
-0.9
663
Tumor
-0.9
777
Tumor
-0.9
1041
Tumor
-0.9
1021
Tumor
-1.0
497
Tumor
-1.0
743
Tumor
-1.0
1045
Tumor
-1.0
545
Tumor
-1.1
523
Tumor
-1.1
635
Tumor
-1.1
955
Tumor
-1.2
131
Tumor
-1.2
951
Tumor
-1.2
715
Tumor
-1.2
393
Tumor
-1.3
641
Tumor
-1.3
331
Tumor
-1.3
171
Tumor
-1.3
277
Tumor
-1.4
977
Tumor
-1.5
965
Tumor
-1.5
957
Tumor
-1.7
1025
Tumor
-1.7
921
Tumor
-1.7
515
Tumor
-1.9
553
Tumor
-2.0
114
Normal
-8.5
111
Normal
N/A
112
Tumor
N/A
123
Tumor
N/A
124
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
