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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMAD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMAD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.0
131
Tumor
0.9
221
Tumor
0.9
443
Tumor
0.8
353
Tumor
0.7
737
Tumor
0.7
467
Tumor
0.7
277
Tumor
0.7
497
Tumor
0.6
285
Tumor
0.6
921
Tumor
0.6
545
Tumor
0.6
161
Tumor
0.6
413
Tumor
0.6
147
Tumor
0.5
421
Tumor
0.5
1021
Tumor
0.5
937
Tumor
0.5
425
Tumor
0.5
473
Tumor
0.5
957
Tumor
0.5
533
Tumor
0.5
515
Tumor
0.5
327
Tumor
0.4
865
Tumor
0.4
666
Normal
0.4
223
Tumor
0.4
863
Tumor
0.4
663
Tumor
0.4
671
Tumor
0.4
951
Tumor
0.4
195
Tumor
0.4
416
Normal
0.4
517
Tumor
0.4
455
Tumor
0.3
141
Tumor
0.3
192
Normal
0.3
777
Tumor
0.3
884
Normal
0.3
1013
Tumor
0.3
648
Normal
0.3
171
Tumor
0.3
647
Tumor
0.3
395
Tumor
0.3
113
Tumor
0.3
617
Tumor
0.3
526
Normal
0.3
527
Tumor
0.3
616
Normal
0.3
271
Tumor
0.3
191
Tumor
0.3
664
Normal
0.3
923
Tumor
0.3
217
Tumor
0.3
463
Tumor
0.3
715
Tumor
0.3
331
Tumor
0.3
1031
Tumor
0.3
743
Tumor
0.3
482
Normal
0.3
563
Tumor
0.3
915
Tumor
0.3
447
Tumor
0.3
477
Tumor
0.3
881
Tumor
0.3
864
Normal
0.2
672
Normal
0.2
913
Tumor
0.2
918
Normal
0.2
187
Tumor
0.2
862
Normal
0.2
145
Tumor
0.2
955
Tumor
0.2
297
Tumor
0.2
866
Normal
0.2
818
Normal
0.2
213
Tumor
0.2
635
Tumor
0.2
446
Normal
0.2
965
Tumor
0.2
364
Normal
0.2
286
Normal
0.2
137
Tumor
0.2
975
Tumor
0.2
355
Tumor
0.2
537
Tumor
0.2
487
Tumor
0.2
858
Normal
0.2
721
Tumor
0.2
968
Normal
0.2
983
Tumor
0.2
1016
Normal
0.2
356
Normal
0.2
926
Normal
0.2
358
Normal
0.2
385
Tumor
0.2
451
Tumor
0.2
431
Tumor
0.2
977
Tumor
0.2
135
Tumor
0.2
816
Normal
0.2
978
Normal
0.2
444
Normal
0.2
984
Normal
0.2
924
Normal
0.2
912
Normal
0.2
861
Tumor
0.2
481
Tumor
0.2
817
Tumor
0.2
641
Tumor
0.2
695
Tumor
0.2
351
Tumor
0.2
713
Tumor
0.2
478
Normal
0.1
1025
Tumor
0.1
518
Normal
0.1
352
Normal
0.1
146
Normal
0.1
462
Normal
0.1
938
Normal
0.1
882
Normal
0.1
514
Normal
0.1
727
Tumor
0.1
341
Tumor
0.1
432
Normal
0.1
851
Tumor
0.1
958
Normal
0.1
665
Tumor
0.1
138
Normal
0.1
742
Normal
0.1
136
Normal
0.1
567
Tumor
0.1
375
Tumor
0.1
964
Normal
0.1
883
Tumor
0.1
456
Normal
0.1
412
Normal
0.1
867
Tumor
0.1
874
Normal
0.1
852
Normal
0.1
824
Normal
0.1
1046
Normal
0.1
284
Normal
0.1
436
Normal
0.1
278
Normal
0.1
142
Normal
0.1
744
Normal
0.1
423
Tumor
0.1
696
Normal
0.1
428
Normal
0.1
314
Normal
0.1
534
Normal
0.1
272
Normal
0.1
952
Normal
0.1
982
Normal
0.1
328
Normal
0.1
452
Normal
0.1
557
Tumor
0.1
484
Normal
0.1
815
Tumor
0.1
525
Tumor
0.1
636
Normal
0.1
466
Normal
0.1
312
Normal
0.1
723
Tumor
0.1
461
Tumor
0.1
218
Normal
0.1
132
Normal
0.1
464
Normal
0.1
1014
Normal
0.1
415
Tumor
0.1
483
Tumor
0.1
1043
Tumor
0.1
916
Normal
0.1
943
Tumor
0.1
228
Normal
0.1
642
Normal
0.1
878
Normal
0.1
618
Normal
0.0
354
Normal
0.0
976
Normal
0.0
857
Tumor
0.0
628
Normal
0.0
528
Normal
0.0
516
Normal
0.0
546
Normal
0.0
728
Normal
0.0
627
Tumor
0.0
524
Normal
0.0
573
Tumor
0.0
944
Normal
0.0
268
Normal
0.0
914
Normal
0.0
258
Normal
0.0
471
Tumor
0.0
283
Tumor
0.0
123
Tumor
0.0
572
Normal
0.0
411
Tumor
0.0
212
Normal
0.0
738
Normal
0.0
261
Tumor
0.0
661
Tumor
0.0
922
Normal
0.0
196
Normal
0.0
498
Normal
0.0
232
Normal
0.0
553
Tumor
0.0
222
Normal
0.0
298
Normal
0.0
814
Normal
0.0
472
Normal
0.0
311
Tumor
0.0
662
Normal
0.0
313
Tumor
0.0
785
Tumor
0.0
574
Normal
0.0
615
Tumor
0.0
558
Normal
0.0
956
Normal
0.0
911
Tumor
0.0
433
Tumor
0.0
427
Tumor
0.0
954
Normal
0.0
868
Normal
0.0
823
Tumor
0.0
262
Normal
0.0
396
Normal
0.0
332
Normal
0.0
185
Tumor
0.0
1042
Normal
0.0
535
Tumor
0.0
724
Normal
0.0
363
Tumor
0.0
367
Tumor
0.0
698
Normal
0.0
126
Normal
0.0
342
Normal
0.0
755
Tumor
0.0
125
Tumor
0.0
966
Normal
0.0
877
Tumor
0.0
393
Tumor
0.0
424
Normal
0.0
917
Tumor
0.0
376
Normal
0.0
925
Tumor
-0.1
981
Tumor
-0.1
148
Normal
-0.1
414
Normal
-0.1
468
Normal
-0.1
722
Normal
-0.1
224
Normal
-0.1
746
Normal
-0.1
1041
Tumor
-0.1
111
Normal
-0.1
873
Tumor
-0.1
492
Normal
-0.1
786
Normal
-0.1
365
Tumor
-0.1
813
Tumor
-0.1
344
Normal
-0.1
554
Normal
-0.1
114
Normal
-0.1
564
Normal
-0.1
474
Normal
-0.1
538
Normal
-0.1
231
Tumor
-0.1
1026
Normal
-0.1
214
Normal
-0.1
536
Normal
-0.1
384
Normal
-0.1
362
Normal
-0.1
434
Normal
-0.1
422
Normal
-0.1
383
Tumor
-0.1
366
Normal
-0.1
357
Tumor
-0.1
1032
Normal
-0.1
392
Normal
-0.1
386
Normal
-0.1
1045
Tumor
-0.1
491
Tumor
-0.1
778
Normal
-0.1
953
Tumor
-0.1
465
Tumor
-0.1
426
Normal
-0.1
568
Normal
-0.1
494
Normal
-0.1
343
Tumor
-0.1
686
Normal
-0.1
963
Tumor
-0.1
257
Tumor
-0.1
388
Normal
-0.1
716
Normal
-0.1
714
Normal
-0.1
756
Normal
-0.1
172
Normal
-0.1
186
Normal
-0.2
368
Normal
-0.2
571
Tumor
-0.2
488
Normal
-0.2
741
Tumor
-0.2
1022
Normal
-0.2
1028
Normal
-0.2
162
Normal
-0.2
1044
Normal
-0.2
188
Normal
-0.2
124
Normal
-0.2
493
Tumor
-0.2
435
Tumor
-0.2
211
Tumor
-0.2
391
Tumor
-0.2
513
Tumor
-0.2
445
Tumor
-0.2
112
Tumor
-0.2
745
Tumor
-0.2
1015
Tumor
-0.2
394
Normal
-0.3
361
Tumor
-0.3
267
Tumor
-0.3
128
Normal
-0.3
448
Normal
-0.3
227
Tumor
-0.3
685
Tumor
-0.3
967
Tumor
-0.3
697
Tumor
-0.4
1027
Tumor
-0.4
387
Tumor
-0.5
127
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
