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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FABP4 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
161.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
108.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
74.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
65.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
64.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
49.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FABP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.3
Number of samples
231
Samples
Sample
Description
TPM
DO48720
0 years, female, NA, stage:2, alive, 570 days
280.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
226.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
214.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
157.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
155.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
145.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
111.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
92.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
88.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
74.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
59.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
57.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
55.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
49.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
47.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
42.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
363
Tumor
3.1
411
Tumor
2.6
983
Tumor
2.3
353
Tumor
1.8
911
Tumor
1.8
1041
Tumor
1.8
913
Tumor
1.7
553
Tumor
1.6
423
Tumor
1.5
713
Tumor
1.4
1027
Tumor
1.4
617
Tumor
1.3
851
Tumor
1.3
491
Tumor
1.3
981
Tumor
1.3
873
Tumor
1.2
433
Tumor
1.2
171
Tumor
1.1
727
Tumor
1.0
192
Normal
1.0
327
Tumor
1.0
741
Tumor
1.0
777
Tumor
1.0
563
Tumor
1.0
536
Normal
0.9
874
Normal
0.9
341
Tumor
0.9
925
Tumor
0.8
365
Tumor
0.8
498
Normal
0.8
641
Tumor
0.7
921
Tumor
0.7
1045
Tumor
0.7
915
Tumor
0.7
567
Tumor
0.7
146
Normal
0.7
354
Normal
0.7
517
Tumor
0.6
1025
Tumor
0.6
478
Normal
0.6
695
Tumor
0.6
477
Tumor
0.6
963
Tumor
0.6
721
Tumor
0.6
227
Tumor
0.6
513
Tumor
0.6
537
Tumor
0.6
524
Normal
0.5
223
Tumor
0.5
923
Tumor
0.5
261
Tumor
0.5
868
Normal
0.5
817
Tumor
0.5
813
Tumor
0.5
724
Normal
0.4
968
Normal
0.4
672
Normal
0.4
916
Normal
0.4
492
Normal
0.4
861
Tumor
0.4
558
Normal
0.4
465
Tumor
0.4
391
Tumor
0.4
487
Tumor
0.4
867
Tumor
0.4
737
Tumor
0.4
221
Tumor
0.4
145
Tumor
0.3
615
Tumor
0.3
112
Tumor
0.3
976
Normal
0.3
224
Normal
0.3
364
Normal
0.3
284
Normal
0.2
958
Normal
0.2
471
Tumor
0.2
538
Normal
0.2
516
Normal
0.2
953
Tumor
0.2
918
Normal
0.2
571
Tumor
0.2
982
Normal
0.2
662
Normal
0.2
493
Tumor
0.2
697
Tumor
0.2
627
Tumor
0.1
965
Tumor
0.1
455
Tumor
0.1
852
Normal
0.1
187
Tumor
0.1
984
Normal
0.1
515
Tumor
0.1
474
Normal
0.1
883
Tumor
0.1
415
Tumor
0.1
412
Normal
0.1
444
Normal
0.0
447
Tumor
0.0
124
Normal
0.0
716
Normal
0.0
461
Tumor
0.0
185
Tumor
0.0
823
Tumor
0.0
966
Normal
0.0
141
Tumor
-0.1
977
Tumor
-0.1
111
Normal
-0.1
483
Tumor
-0.1
328
Normal
-0.1
472
Normal
-0.1
384
Normal
-0.1
434
Normal
-0.1
635
Tumor
-0.1
126
Normal
-0.2
1044
Normal
-0.2
722
Normal
-0.2
386
Normal
-0.2
123
Tumor
-0.2
546
Normal
-0.2
213
Tumor
-0.2
421
Tumor
-0.2
488
Normal
-0.2
527
Tumor
-0.2
884
Normal
-0.2
394
Normal
-0.2
924
Normal
-0.2
557
Tumor
-0.2
685
Tumor
-0.2
494
Normal
-0.2
554
Normal
-0.2
416
Normal
-0.3
481
Tumor
-0.3
1032
Normal
-0.3
912
Normal
-0.3
356
Normal
-0.3
392
Normal
-0.3
882
Normal
-0.3
188
Normal
-0.3
468
Normal
-0.3
448
Normal
-0.3
191
Tumor
-0.3
268
Normal
-0.3
195
Tumor
-0.3
424
Normal
-0.3
954
Normal
-0.3
943
Tumor
-0.3
816
Normal
-0.3
952
Normal
-0.3
297
Tumor
-0.3
514
Normal
-0.3
647
Tumor
-0.3
218
Normal
-0.4
744
Normal
-0.4
533
Tumor
-0.4
696
Normal
-0.4
738
Normal
-0.4
572
Normal
-0.4
815
Tumor
-0.4
628
Normal
-0.4
344
Normal
-0.4
127
Tumor
-0.4
528
Normal
-0.4
228
Normal
-0.4
311
Tumor
-0.4
463
Tumor
-0.5
1015
Tumor
-0.5
743
Tumor
-0.5
723
Tumor
-0.5
922
Normal
-0.5
814
Normal
-0.5
978
Normal
-0.5
975
Tumor
-0.5
523
Tumor
-0.5
956
Normal
-0.5
518
Normal
-0.5
878
Normal
-0.5
1028
Normal
-0.5
728
Normal
-0.5
352
Normal
-0.5
917
Tumor
-0.5
926
Normal
-0.5
1026
Normal
-0.5
138
Normal
-0.5
818
Normal
-0.5
756
Normal
-0.5
742
Normal
-0.5
172
Normal
-0.5
1014
Normal
-0.5
214
Normal
-0.6
636
Normal
-0.6
574
Normal
-0.6
1021
Tumor
-0.6
114
Normal
-0.6
535
Tumor
-0.6
212
Normal
-0.6
396
Normal
-0.6
1022
Normal
-0.6
355
Tumor
-0.6
1031
Tumor
-0.6
568
Normal
-0.6
944
Normal
-0.6
618
Normal
-0.6
1042
Normal
-0.6
484
Normal
-0.6
125
Tumor
-0.6
862
Normal
-0.6
616
Normal
-0.6
526
Normal
-0.6
467
Tumor
-0.7
755
Tumor
-0.7
686
Normal
-0.7
938
Normal
-0.7
955
Tumor
-0.7
698
Normal
-0.7
881
Tumor
-0.7
714
Normal
-0.7
466
Normal
-0.7
137
Tumor
-0.7
443
Tumor
-0.7
142
Normal
-0.7
147
Tumor
-0.7
231
Tumor
-0.7
366
Normal
-0.7
746
Normal
-0.7
342
Normal
-0.8
482
Normal
-0.8
786
Normal
-0.8
824
Normal
-0.8
388
Normal
-0.8
462
Normal
-0.8
715
Tumor
-0.8
642
Normal
-0.8
217
Tumor
-0.8
534
Normal
-0.8
331
Tumor
-0.8
435
Tumor
-0.8
745
Tumor
-0.8
785
Tumor
-0.8
564
Normal
-0.8
428
Normal
-0.8
312
Normal
-0.8
778
Normal
-0.8
473
Tumor
-0.9
196
Normal
-0.9
1046
Normal
-0.9
1043
Tumor
-0.9
361
Tumor
-0.9
358
Normal
-0.9
262
Normal
-0.9
128
Normal
-0.9
866
Normal
-0.9
1016
Normal
-0.9
545
Tumor
-0.9
666
Normal
-0.9
858
Normal
-0.9
937
Tumor
-0.9
951
Tumor
-0.9
186
Normal
-1.0
148
Normal
-1.0
445
Tumor
-1.0
964
Normal
-1.0
525
Tumor
-1.0
278
Normal
-1.0
497
Tumor
-1.0
332
Normal
-1.0
422
Normal
-1.0
314
Normal
-1.0
162
Normal
-1.0
211
Tumor
-1.0
664
Normal
-1.0
367
Tumor
-1.0
368
Normal
-1.0
272
Normal
-1.0
258
Normal
-1.1
446
Normal
-1.1
232
Normal
-1.1
298
Normal
-1.1
362
Normal
-1.1
136
Normal
-1.1
357
Tumor
-1.1
464
Normal
-1.1
864
Normal
-1.1
967
Tumor
-1.1
426
Normal
-1.1
877
Tumor
-1.1
286
Normal
-1.2
383
Tumor
-1.2
573
Tumor
-1.2
222
Normal
-1.2
161
Tumor
-1.2
414
Normal
-1.2
1013
Tumor
-1.2
863
Tumor
-1.2
452
Normal
-1.2
343
Tumor
-1.3
271
Tumor
-1.3
456
Normal
-1.3
387
Tumor
-1.3
132
Normal
-1.3
671
Tumor
-1.3
857
Tumor
-1.3
283
Tumor
-1.3
376
Normal
-1.3
267
Tumor
-1.4
648
Normal
-1.4
431
Tumor
-1.5
432
Normal
-1.5
113
Tumor
-1.5
277
Tumor
-1.5
351
Tumor
-1.6
665
Tumor
-1.6
957
Tumor
-1.6
436
Normal
-1.6
413
Tumor
-1.7
663
Tumor
-1.7
427
Tumor
-1.7
313
Tumor
-1.9
285
Tumor
-1.9
257
Tumor
-1.9
135
Tumor
-2.0
661
Tumor
-2.0
451
Tumor
-2.0
865
Tumor
-2.0
385
Tumor
-2.0
425
Tumor
-2.1
131
Tumor
-2.1
375
Tumor
-2.3
393
Tumor
-2.5
395
Tumor
-2.6
914
Normal
-4.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
