MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:21.8 nTPM
GTEx:43.7 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:13.9 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.9
2019 Male, age 18, unknown 20.0
1870 Female, age 42, unknown 18.3
1833 Male, age 53, unknown 17.5
2411 Female, age 72, unknown 17.5
1827 Male, age 72, unknown 17.1
2828 Female, age 72, unknown 17.1
2219 Male, age 76, both hemispheres 17.0
2666 Male, age 74, left hemisphere 17.0
1830 Male, age 51, unknown 16.1
2586 Male, age 75, left hemisphere 11.2
Dorsal raphe nucleus
nTPM: 17.4
1828 Male, age 53, unknown 18.5
2298 Female, age 72, unknown 18.1
2750 Male, age 76, both hemispheres 17.7
2016 Female, age 72, unknown 17.5
2047 Male, age 72, unknown 15.4
Inferior colliculus
nTPM: 18.8
2849 Male, age 72, unknown 19.6
1890 Male, age 53, unknown 18.8
1848 Female, age 42, unknown 18.7
2097 Female, age 72, unknown 18.2
Median raphe nucleus
nTPM: 21.8
2220 Male, age 76, midline 21.8
Periaquaductal grey, anterior
nTPM: 15.6
1795 Male, age 51, unknown 16.3
1947 Male, age 18, unknown 16.0
2502 Female, age 75, unknown 14.5
Periaquaductal grey, dorsal
nTPM: 18.2
2850 Male, age 76, both hemispheres 22.7
1831 Male, age 72, unknown 18.0
1840 Male, age 53, unknown 16.6
2464 Female, age 72, unknown 15.6
Periaquaductal grey, lateral
nTPM: 18.7
2140 Male, age 76, both hemispheres 20.1
2272 Male, age 74, both hemispheres 19.6
2053 Male, age 18, unknown 16.4
Pretectal area
nTPM: 19.8
2273 Male, age 74, both hemispheres 25.6
1817 Female, age 42, unknown 23.2
1944 Female, age 72, unknown 22.7
1816 Male, age 51, unknown 21.2
1815 Male, age 53, unknown 20.9
2007 Male, age 72, unknown 20.8
2667 Female, age 75, unknown 19.2
2224 Female, age 72, unknown 18.1
2825 Male, age 18, unknown 15.6
2407 Male, age 75, both hemispheres 15.5
2316 Male, age 76, right hemisphere 14.6
Red nucleus
nTPM: 19.0
1865 Male, age 51, unknown 20.7
2725 Female, age 75, unknown 20.6
2503 Female, age 72, unknown 20.5
2785 Male, age 18, unknown 20.2
2823 Male, age 76, right hemisphere 20.0
1821 Female, age 72, unknown 19.0
2227 Male, age 72, unknown 18.6
1954 Female, age 42, unknown 18.5
1904 Male, age 53, unknown 18.4
2588 Male, age 74, left hemisphere 18.2
2769 Male, age 72, unknown 17.9
2584 Male, age 75, left hemisphere 15.3
Substantia nigra
nTPM: 19.3
2409 Female, age 72, unknown 22.1
1889 Female, age 72, unknown 21.6
2590 Female, age 75, unknown 21.2
2241 Male, age 72, unknown 19.8
1916 Female, age 42, unknown 18.9
2699 Male, age 18, unknown 18.8
2665 Male, age 74, both hemispheres 18.6
1851 Male, age 51, unknown 18.5
1941 Male, age 53, unknown 18.2
2583 Male, age 75, right hemisphere 15.6
Superior colliculus
nTPM: 18.1
1913 Female, age 42, unknown 22.3
2261 Male, age 18, unknown 19.9
2087 Female, age 72, unknown 19.6
2587 Male, age 74, left hemisphere 19.3
1796 Male, age 53, unknown 18.9
1995 Male, age 72, unknown 18.5
1839 Male, age 51, unknown 17.7
2668 Female, age 75, unknown 16.3
1895 Male, age 76, right hemisphere 16.1
2664 Male, age 75, both hemispheres 12.6
Ventral tegmental area
nTPM: 18.6
2223 Female, age 72, unknown 20.7
2218 Male, age 76, both hemispheres 19.6
2410 Female, age 72, unknown 18.7
1915 Female, age 42, unknown 18.6
2021 Male, age 53, unknown 17.6
1942 Male, age 51, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 139

Max nTPM: 92.0
Min nTPM: 18.5
Std nTPM: 10.8
Median nTPM: 42.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 92.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 87.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 71.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 66.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 62.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 61.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 60.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 60.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 60.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 60.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.9
Samples: 4

Max nTPM: 69.6
Min nTPM: 38.2
Sample A Female 69.6
Sample B Female 40.4
Sample C Male 43.5
Sample D Male 38.2
Midbrain
nTPM: 59.1
Samples: 4

Max nTPM: 65.0
Min nTPM: 49.8
Sample A Female 65.0
Sample B Female 49.8
Sample C Male 58.3
Sample D Male 63.4
Periaqueductal gray
nTPM: 40.4
Samples: 3

Max nTPM: 43.7
Min nTPM: 34.6
Sample B Female 42.8
Sample C Male 43.7
Sample D Male 34.6
Superior colliculi
nTPM: 64.1
Samples: 4

Max nTPM: 87.9
Min nTPM: 46.4
Sample A Female 87.9
Sample B Female 46.4
Sample C Male 68.8
Sample D Male 53.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 13.4
Sample A Male 13.7
Sample B Male 14.6
Sample C Female 13.4
Sample D Female 14.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69114902 Antisense, RP_050317_02_C08, Mouse strain C57BL/6J (56 days, male) 2.5

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