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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CMTM8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
105.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
70.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
69.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
61.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
56.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
55.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
53.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
52.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
48.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
48.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
47.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
46.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
46.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
43.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
42.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
41.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
40.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
40.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
39.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
38.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
38.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
34.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
34.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CMTM8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.1
Number of samples
231
Samples
Sample
Description
TPM
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
558
Normal
1.5
227
Tumor
1.4
571
Tumor
1.4
271
Tumor
1.4
567
Tumor
1.3
573
Tumor
1.3
921
Tumor
1.3
572
Normal
1.2
574
Normal
1.1
443
Tumor
1.0
452
Normal
1.0
196
Normal
1.0
568
Normal
1.0
557
Tumor
0.9
465
Tumor
0.9
564
Normal
0.9
435
Tumor
0.9
222
Normal
0.9
221
Tumor
0.8
455
Tumor
0.8
426
Normal
0.8
218
Normal
0.8
463
Tumor
0.8
413
Tumor
0.7
445
Tumor
0.7
537
Tumor
0.7
127
Tumor
0.7
428
Normal
0.7
563
Tumor
0.7
451
Tumor
0.6
915
Tumor
0.6
363
Tumor
0.6
432
Normal
0.6
526
Normal
0.6
883
Tumor
0.6
433
Tumor
0.6
217
Tumor
0.6
815
Tumor
0.6
147
Tumor
0.5
446
Normal
0.5
468
Normal
0.5
427
Tumor
0.5
924
Normal
0.5
456
Normal
0.5
923
Tumor
0.5
422
Normal
0.4
488
Normal
0.4
186
Normal
0.4
421
Tumor
0.4
272
Normal
0.4
431
Tumor
0.4
464
Normal
0.4
258
Normal
0.4
462
Normal
0.4
367
Tumor
0.4
964
Normal
0.4
482
Normal
0.4
214
Normal
0.4
913
Tumor
0.4
472
Normal
0.4
436
Normal
0.3
481
Tumor
0.3
882
Normal
0.3
818
Normal
0.3
394
Normal
0.3
123
Tumor
0.3
858
Normal
0.3
283
Tumor
0.3
916
Normal
0.3
863
Tumor
0.3
816
Normal
0.3
213
Tumor
0.3
162
Normal
0.3
423
Tumor
0.3
471
Tumor
0.3
425
Tumor
0.2
351
Tumor
0.2
514
Normal
0.2
172
Normal
0.2
195
Tumor
0.2
877
Tumor
0.2
478
Normal
0.2
328
Normal
0.2
477
Tumor
0.2
185
Tumor
0.2
881
Tumor
0.2
938
Normal
0.2
467
Tumor
0.2
498
Normal
0.2
956
Normal
0.2
112
Tumor
0.2
911
Tumor
0.2
268
Normal
0.2
912
Normal
0.2
113
Tumor
0.2
434
Normal
0.2
148
Normal
0.1
344
Normal
0.1
358
Normal
0.1
416
Normal
0.1
262
Normal
0.1
851
Tumor
0.1
466
Normal
0.1
922
Normal
0.1
415
Tumor
0.1
228
Normal
0.1
954
Normal
0.1
516
Normal
0.1
528
Normal
0.1
424
Normal
0.1
231
Tumor
0.1
817
Tumor
0.1
884
Normal
0.1
868
Normal
0.0
952
Normal
0.0
865
Tumor
0.0
114
Normal
0.0
513
Tumor
0.0
125
Tumor
0.0
524
Normal
0.0
111
Normal
0.0
354
Normal
0.0
352
Normal
0.0
412
Normal
0.0
874
Normal
0.0
124
Normal
0.0
444
Normal
0.0
873
Tumor
0.0
918
Normal
-0.1
261
Tumor
-0.1
474
Normal
-0.1
126
Normal
-0.1
491
Tumor
-0.1
191
Tumor
-0.1
267
Tumor
-0.1
968
Normal
-0.1
553
Tumor
-0.1
494
Normal
-0.1
388
Normal
-0.1
824
Normal
-0.1
342
Normal
-0.1
257
Tumor
-0.1
484
Normal
-0.1
914
Normal
-0.1
128
Normal
-0.1
527
Tumor
-0.1
546
Normal
-0.1
391
Tumor
-0.1
944
Normal
-0.1
171
Tumor
-0.1
545
Tumor
-0.1
187
Tumor
-0.1
538
Normal
-0.1
878
Normal
-0.1
515
Tumor
-0.1
958
Normal
-0.1
517
Tumor
-0.1
525
Tumor
-0.1
192
Normal
-0.1
852
Normal
-0.1
327
Tumor
-0.1
356
Normal
-0.1
393
Tumor
-0.1
232
Normal
-0.2
951
Tumor
-0.2
365
Tumor
-0.2
188
Normal
-0.2
286
Normal
-0.2
386
Normal
-0.2
395
Tumor
-0.2
341
Tumor
-0.2
866
Normal
-0.2
364
Normal
-0.2
483
Tumor
-0.2
366
Normal
-0.2
355
Tumor
-0.2
396
Normal
-0.2
857
Tumor
-0.2
862
Normal
-0.2
361
Tumor
-0.2
955
Tumor
-0.2
864
Normal
-0.2
925
Tumor
-0.2
518
Normal
-0.2
414
Normal
-0.3
867
Tumor
-0.3
492
Normal
-0.3
937
Tumor
-0.3
343
Tumor
-0.3
966
Normal
-0.3
953
Tumor
-0.3
926
Normal
-0.3
975
Tumor
-0.3
161
Tumor
-0.3
368
Normal
-0.3
976
Normal
-0.3
392
Normal
-0.3
967
Tumor
-0.3
224
Normal
-0.3
487
Tumor
-0.3
963
Tumor
-0.4
223
Tumor
-0.4
823
Tumor
-0.4
387
Tumor
-0.4
411
Tumor
-0.4
554
Normal
-0.4
534
Normal
-0.4
362
Normal
-0.4
965
Tumor
-0.4
957
Tumor
-0.4
357
Tumor
-0.5
473
Tumor
-0.5
353
Tumor
-0.5
523
Tumor
-0.5
384
Normal
-0.5
385
Tumor
-0.5
917
Tumor
-0.6
376
Normal
-0.6
285
Tumor
-0.6
497
Tumor
-0.7
461
Tumor
-0.7
493
Tumor
-0.7
284
Normal
-0.7
383
Tumor
-0.7
943
Tumor
-0.8
212
Normal
-0.9
533
Tumor
-1.0
375
Tumor
-1.0
861
Tumor
-1.6
211
Tumor
-2.4
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
1045
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
