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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2E1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
144.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
134.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
126.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
118.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
104.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
104.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
91.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
91.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
88.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
84.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
81.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
81.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
78.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
77.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
76.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
75.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
74.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
74.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
73.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
71.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
70.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
68.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
65.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
65.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
64.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
63.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
62.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
60.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
60.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
59.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
59.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
58.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
57.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
57.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
56.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
56.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
56.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
53.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
53.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
52.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
52.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
52.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
51.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
50.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
49.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
49.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
49.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
48.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
45.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
43.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
42.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
41.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
41.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
31.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2E1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.7
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
71.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
70.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
66.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
65.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
62.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
58.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
58.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
55.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
54.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
54.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
52.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
50.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
49.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
48.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
48.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
47.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
44.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
43.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
35.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
1.1
131
Tumor
1.1
743
Tumor
1.0
425
Tumor
0.9
385
Tumor
0.9
983
Tumor
0.8
1031
Tumor
0.8
517
Tumor
0.7
427
Tumor
0.7
951
Tumor
0.7
865
Tumor
0.7
285
Tumor
0.7
661
Tumor
0.7
535
Tumor
0.7
715
Tumor
0.6
937
Tumor
0.6
351
Tumor
0.6
943
Tumor
0.6
1025
Tumor
0.6
192
Normal
0.5
737
Tumor
0.5
367
Tumor
0.5
413
Tumor
0.5
713
Tumor
0.5
917
Tumor
0.5
395
Tumor
0.4
421
Tumor
0.4
523
Tumor
0.4
567
Tumor
0.4
881
Tumor
0.4
227
Tumor
0.4
471
Tumor
0.4
211
Tumor
0.4
125
Tumor
0.4
223
Tumor
0.4
923
Tumor
0.4
497
Tumor
0.4
411
Tumor
0.4
921
Tumor
0.3
213
Tumor
0.3
447
Tumor
0.3
513
Tumor
0.3
877
Tumor
0.3
647
Tumor
0.3
525
Tumor
0.3
428
Normal
0.3
393
Tumor
0.3
814
Normal
0.3
815
Tumor
0.3
671
Tumor
0.3
1045
Tumor
0.3
185
Tumor
0.3
483
Tumor
0.3
685
Tumor
0.3
217
Tumor
0.2
487
Tumor
0.2
363
Tumor
0.2
113
Tumor
0.2
537
Tumor
0.2
1043
Tumor
0.2
745
Tumor
0.2
424
Normal
0.2
443
Tumor
0.2
161
Tumor
0.2
967
Tumor
0.2
1021
Tumor
0.2
536
Normal
0.2
813
Tumor
0.2
391
Tumor
0.2
375
Tumor
0.2
343
Tumor
0.2
444
Normal
0.2
414
Normal
0.2
415
Tumor
0.2
957
Tumor
0.2
461
Tumor
0.2
498
Normal
0.2
916
Normal
0.2
331
Tumor
0.2
641
Tumor
0.2
515
Tumor
0.2
492
Normal
0.2
913
Tumor
0.2
387
Tumor
0.1
573
Tumor
0.1
721
Tumor
0.1
135
Tumor
0.1
695
Tumor
0.1
431
Tumor
0.1
221
Tumor
0.1
1041
Tumor
0.1
777
Tumor
0.1
755
Tumor
0.1
545
Tumor
0.1
191
Tumor
0.1
352
Normal
0.1
817
Tumor
0.1
727
Tumor
0.1
488
Normal
0.1
516
Normal
0.1
873
Tumor
0.1
977
Tumor
0.1
724
Normal
0.1
426
Normal
0.1
141
Tumor
0.1
883
Tumor
0.1
925
Tumor
0.1
617
Tumor
0.1
147
Tumor
0.1
663
Tumor
0.1
341
Tumor
0.1
478
Normal
0.1
344
Normal
0.1
911
Tumor
0.1
966
Normal
0.1
477
Tumor
0.1
384
Normal
0.1
1013
Tumor
0.1
697
Tumor
0.0
851
Tumor
0.0
364
Normal
0.0
271
Tumor
0.0
327
Tumor
0.0
422
Normal
0.0
272
Normal
0.0
878
Normal
0.0
262
Normal
0.0
533
Tumor
0.0
383
Tumor
0.0
741
Tumor
0.0
524
Normal
0.0
261
Tumor
0.0
635
Tumor
0.0
434
Normal
0.0
268
Normal
0.0
952
Normal
0.0
1015
Tumor
0.0
563
Tumor
0.0
553
Tumor
0.0
938
Normal
0.0
861
Tumor
0.0
474
Normal
0.0
137
Tumor
0.0
665
Tumor
0.0
723
Tumor
0.0
232
Normal
0.0
257
Tumor
0.0
412
Normal
0.0
484
Normal
0.0
472
Normal
0.0
297
Tumor
0.0
491
Tumor
-0.1
1044
Normal
-0.1
816
Normal
-0.1
518
Normal
-0.1
924
Normal
-0.1
146
Normal
-0.1
955
Tumor
-0.1
984
Normal
-0.1
738
Normal
-0.1
311
Tumor
-0.1
696
Normal
-0.1
744
Normal
-0.1
716
Normal
-0.1
355
Tumor
-0.1
435
Tumor
-0.1
698
Normal
-0.1
571
Tumor
-0.1
466
Normal
-0.1
494
Normal
-0.1
953
Tumor
-0.1
126
Normal
-0.1
615
Tumor
-0.1
785
Tumor
-0.1
432
Normal
-0.1
228
Normal
-0.1
874
Normal
-0.1
462
Normal
-0.1
446
Normal
-0.1
742
Normal
-0.1
963
Tumor
-0.1
436
Normal
-0.1
965
Tumor
-0.1
1026
Normal
-0.1
975
Tumor
-0.1
493
Tumor
-0.1
416
Normal
-0.1
145
Tumor
-0.1
286
Normal
-0.1
546
Normal
-0.1
448
Normal
-0.1
714
Normal
-0.1
914
Normal
-0.1
1028
Normal
-0.1
616
Normal
-0.1
224
Normal
-0.1
982
Normal
-0.1
558
Normal
-0.1
467
Tumor
-0.1
915
Tumor
-0.1
864
Normal
-0.1
328
Normal
-0.1
922
Normal
-0.1
722
Normal
-0.2
746
Normal
-0.2
686
Normal
-0.2
862
Normal
-0.2
976
Normal
-0.2
456
Normal
-0.2
284
Normal
-0.2
356
Normal
-0.2
778
Normal
-0.2
1016
Normal
-0.2
362
Normal
-0.2
968
Normal
-0.2
127
Tumor
-0.2
142
Normal
-0.2
823
Tumor
-0.2
148
Normal
-0.2
468
Normal
-0.2
298
Normal
-0.2
1014
Normal
-0.2
514
Normal
-0.2
212
Normal
-0.2
557
Tumor
-0.2
618
Normal
-0.2
978
Normal
-0.2
188
Normal
-0.2
433
Tumor
-0.2
423
Tumor
-0.2
538
Normal
-0.2
572
Normal
-0.2
464
Normal
-0.2
473
Tumor
-0.2
627
Tumor
-0.2
354
Normal
-0.2
918
Normal
-0.2
388
Normal
-0.2
314
Normal
-0.2
452
Normal
-0.2
1046
Normal
-0.2
463
Tumor
-0.2
662
Normal
-0.2
867
Tumor
-0.2
267
Tumor
-0.2
964
Normal
-0.2
534
Normal
-0.2
554
Normal
-0.2
527
Tumor
-0.2
123
Tumor
-0.2
114
Normal
-0.2
756
Normal
-0.2
214
Normal
-0.2
628
Normal
-0.2
636
Normal
-0.2
394
Normal
-0.2
111
Normal
-0.2
786
Normal
-0.2
956
Normal
-0.3
386
Normal
-0.3
455
Tumor
-0.3
124
Normal
-0.3
481
Tumor
-0.3
218
Normal
-0.3
278
Normal
-0.3
112
Tumor
-0.3
258
Normal
-0.3
138
Normal
-0.3
926
Normal
-0.3
981
Tumor
-0.3
332
Normal
-0.3
396
Normal
-0.3
196
Normal
-0.3
866
Normal
-0.3
958
Normal
-0.3
642
Normal
-0.3
944
Normal
-0.3
353
Tumor
-0.3
1022
Normal
-0.3
136
Normal
-0.3
728
Normal
-0.3
526
Normal
-0.3
132
Normal
-0.3
187
Tumor
-0.3
528
Normal
-0.3
195
Tumor
-0.3
445
Tumor
-0.3
857
Tumor
-0.3
128
Normal
-0.3
342
Normal
-0.3
863
Tumor
-0.3
312
Normal
-0.3
568
Normal
-0.3
186
Normal
-0.4
954
Normal
-0.4
358
Normal
-0.4
852
Normal
-0.4
361
Tumor
-0.4
482
Normal
-0.4
664
Normal
-0.4
882
Normal
-0.4
824
Normal
-0.4
277
Tumor
-0.4
366
Normal
-0.4
1032
Normal
-0.4
884
Normal
-0.4
868
Normal
-0.4
1027
Tumor
-0.5
564
Normal
-0.5
574
Normal
-0.5
648
Normal
-0.5
172
Normal
-0.5
313
Tumor
-0.5
162
Normal
-0.5
451
Tumor
-0.5
672
Normal
-0.5
376
Normal
-0.5
368
Normal
-0.5
222
Normal
-0.5
1042
Normal
-0.5
858
Normal
-0.6
818
Normal
-0.6
231
Tumor
-0.6
392
Normal
-0.6
171
Tumor
-0.6
357
Tumor
-0.6
912
Normal
-0.6
666
Normal
-0.6
365
Tumor
-0.7
465
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
