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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YWHAG is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
157.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
152.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
135.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
134.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
123.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
120.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
113.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
108.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
105.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
100.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
93.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
90.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
89.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
85.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
85.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
81.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
81.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
81.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
80.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
75.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
74.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
73.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
73.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
72.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
71.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
70.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
70.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
70.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
70.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
70.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
69.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
68.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
68.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
68.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
65.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
65.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
65.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
65.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
64.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
62.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
61.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
61.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
61.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
61.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
59.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
58.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
58.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
58.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
57.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
56.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
56.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
56.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
56.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
55.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
54.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
54.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
54.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
53.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
53.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
53.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
53.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
53.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
52.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
52.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
52.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
52.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
51.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
51.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
50.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
49.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
48.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
48.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
48.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
47.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
47.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
47.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
46.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
46.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
45.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
44.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
44.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
44.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
43.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
43.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
42.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
42.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
42.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
40.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
40.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
36.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
32.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
31.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
29.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
26.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YWHAG is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.6
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
137.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
123.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
120.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
109.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
96.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
93.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
91.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
91.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
88.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
85.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
83.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
83.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
81.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
80.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
79.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
74.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
74.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
72.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
72.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
71.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
71.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
68.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
68.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
67.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
67.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
66.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
66.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
65.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
65.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
64.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
63.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
62.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
62.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
62.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
61.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
61.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
60.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
60.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
60.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
59.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
59.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
59.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
59.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
59.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
58.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
57.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
57.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
57.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
56.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
56.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
56.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
56.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
55.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
54.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
53.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
53.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
53.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
52.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
52.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
52.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
51.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
51.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
51.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
51.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
51.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
50.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
50.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
49.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
49.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
48.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
48.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
48.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
47.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
47.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
46.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
46.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
46.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
45.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
44.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
43.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
43.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
43.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
43.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
41.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
41.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
40.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
39.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
39.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
39.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
33.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
32.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
0.5
911
Tumor
0.5
743
Tumor
0.5
1013
Tumor
0.4
915
Tumor
0.4
491
Tumor
0.4
685
Tumor
0.4
131
Tumor
0.3
327
Tumor
0.3
925
Tumor
0.3
573
Tumor
0.3
1027
Tumor
0.3
231
Tumor
0.3
211
Tumor
0.3
481
Tumor
0.2
455
Tumor
0.2
223
Tumor
0.2
1045
Tumor
0.2
695
Tumor
0.2
917
Tumor
0.2
715
Tumor
0.2
171
Tumor
0.2
195
Tumor
0.2
191
Tumor
0.2
351
Tumor
0.2
755
Tumor
0.2
535
Tumor
0.2
665
Tumor
0.2
851
Tumor
0.2
513
Tumor
0.2
817
Tumor
0.2
785
Tumor
0.2
545
Tumor
0.2
523
Tumor
0.2
395
Tumor
0.2
297
Tumor
0.2
353
Tumor
0.1
483
Tumor
0.1
963
Tumor
0.1
983
Tumor
0.1
913
Tumor
0.1
533
Tumor
0.1
873
Tumor
0.1
127
Tumor
0.1
957
Tumor
0.1
745
Tumor
0.1
416
Normal
0.1
982
Normal
0.1
147
Tumor
0.1
977
Tumor
0.1
415
Tumor
0.1
868
Normal
0.1
727
Tumor
0.1
261
Tumor
0.1
813
Tumor
0.1
724
Normal
0.1
311
Tumor
0.1
478
Normal
0.1
515
Tumor
0.1
361
Tumor
0.1
1016
Normal
0.1
728
Normal
0.1
451
Tumor
0.1
192
Normal
0.1
537
Tumor
0.1
741
Tumor
0.1
857
Tumor
0.1
445
Tumor
0.1
952
Normal
0.1
331
Tumor
0.1
283
Tumor
0.1
824
Normal
0.1
412
Normal
0.1
344
Normal
0.1
617
Tumor
0.1
916
Normal
0.1
525
Tumor
0.1
217
Tumor
0.1
484
Normal
0.1
187
Tumor
0.1
375
Tumor
0.1
1026
Normal
0.1
921
Tumor
0.1
222
Normal
0.1
332
Normal
0.0
385
Tumor
0.0
498
Normal
0.0
218
Normal
0.0
861
Tumor
0.0
185
Tumor
0.0
1044
Normal
0.0
358
Normal
0.0
364
Normal
0.0
213
Tumor
0.0
864
Normal
0.0
816
Normal
0.0
984
Normal
0.0
355
Tumor
0.0
744
Normal
0.0
188
Normal
0.0
964
Normal
0.0
866
Normal
0.0
472
Normal
0.0
924
Normal
0.0
312
Normal
0.0
425
Tumor
0.0
1014
Normal
0.0
257
Tumor
0.0
874
Normal
0.0
524
Normal
0.0
852
Normal
0.0
698
Normal
0.0
135
Tumor
0.0
517
Tumor
0.0
328
Normal
0.0
955
Tumor
0.0
815
Tumor
0.0
862
Normal
0.0
738
Normal
0.0
447
Tumor
0.0
354
Normal
0.0
1022
Normal
0.0
342
Normal
0.0
482
Normal
0.0
1015
Tumor
0.0
212
Normal
0.0
393
Tumor
0.0
976
Normal
0.0
516
Normal
0.0
423
Tumor
0.0
536
Normal
0.0
746
Normal
0.0
968
Normal
0.0
563
Tumor
0.0
518
Normal
0.0
356
Normal
0.0
196
Normal
0.0
546
Normal
0.0
362
Normal
0.0
867
Tumor
0.0
314
Normal
0.0
937
Tumor
0.0
492
Normal
0.0
557
Tumor
0.0
713
Tumor
0.0
926
Normal
0.0
343
Tumor
0.0
471
Tumor
0.0
436
Normal
0.0
918
Normal
0.0
368
Normal
0.0
538
Normal
0.0
145
Tumor
0.0
448
Normal
0.0
615
Tumor
0.0
386
Normal
0.0
671
Tumor
0.0
488
Normal
0.0
882
Normal
0.0
137
Tumor
0.0
494
Normal
0.0
922
Normal
0.0
778
Normal
0.0
376
Normal
0.0
394
Normal
0.0
878
Normal
0.0
444
Normal
0.0
978
Normal
0.0
285
Tumor
0.0
944
Normal
0.0
966
Normal
0.0
1032
Normal
0.0
1021
Tumor
0.0
528
Normal
0.0
914
Normal
0.0
366
Normal
0.0
477
Tumor
0.0
553
Tumor
0.0
228
Normal
0.0
284
Normal
0.0
742
Normal
0.0
777
Tumor
0.0
883
Tumor
0.0
278
Normal
0.0
462
Normal
0.0
474
Normal
0.0
823
Tumor
0.0
514
Normal
0.0
958
Normal
0.0
737
Tumor
0.0
627
Tumor
0.0
1028
Normal
0.0
221
Tumor
0.0
456
Normal
0.0
286
Normal
0.0
881
Tumor
0.0
716
Normal
0.0
452
Normal
0.0
648
Normal
0.0
464
Normal
0.0
363
Tumor
0.0
214
Normal
0.0
714
Normal
0.0
1043
Tumor
0.0
534
Normal
0.0
392
Normal
0.0
352
Normal
0.0
756
Normal
0.0
666
Normal
-0.1
396
Normal
-0.1
858
Normal
-0.1
967
Tumor
-0.1
818
Normal
-0.1
786
Normal
-0.1
146
Normal
-0.1
162
Normal
-0.1
956
Normal
-0.1
298
Normal
-0.1
136
Normal
-0.1
126
Normal
-0.1
268
Normal
-0.1
723
Tumor
-0.1
1042
Normal
-0.1
186
Normal
-0.1
384
Normal
-0.1
431
Tumor
-0.1
113
Tumor
-0.1
427
Tumor
-0.1
365
Tumor
-0.1
461
Tumor
-0.1
446
Normal
-0.1
367
Tumor
-0.1
493
Tumor
-0.1
814
Normal
-0.1
161
Tumor
-0.1
435
Tumor
-0.1
138
Normal
-0.1
111
Normal
-0.1
172
Normal
-0.1
224
Normal
-0.1
262
Normal
-0.1
148
Normal
-0.1
664
Normal
-0.1
128
Normal
-0.1
258
Normal
-0.1
1031
Tumor
-0.1
313
Tumor
-0.1
391
Tumor
-0.1
884
Normal
-0.1
142
Normal
-0.1
466
Normal
-0.1
465
Tumor
-0.1
387
Tumor
-0.1
975
Tumor
-0.1
697
Tumor
-0.1
388
Normal
-0.1
383
Tumor
-0.1
422
Normal
-0.1
635
Tumor
-0.1
938
Normal
-0.1
487
Tumor
-0.1
568
Normal
-0.1
641
Tumor
-0.1
672
Normal
-0.1
686
Normal
-0.1
558
Normal
-0.1
414
Normal
-0.1
572
Normal
-0.1
132
Normal
-0.1
426
Normal
-0.1
527
Tumor
-0.1
618
Normal
-0.1
424
Normal
-0.1
526
Normal
-0.1
1041
Tumor
-0.1
662
Normal
-0.1
564
Normal
-0.1
951
Tumor
-0.1
497
Tumor
-0.1
434
Normal
-0.1
722
Normal
-0.1
571
Tumor
-0.1
341
Tumor
-0.1
954
Normal
-0.1
1046
Normal
-0.1
981
Tumor
-0.1
114
Normal
-0.1
696
Normal
-0.1
574
Normal
-0.1
432
Normal
-0.1
1025
Tumor
-0.1
272
Normal
-0.1
271
Tumor
-0.1
413
Tumor
-0.1
124
Normal
-0.1
721
Tumor
-0.1
141
Tumor
-0.2
912
Normal
-0.2
428
Normal
-0.2
123
Tumor
-0.2
628
Normal
-0.2
125
Tumor
-0.2
663
Tumor
-0.2
642
Normal
-0.2
468
Normal
-0.2
232
Normal
-0.2
463
Tumor
-0.2
965
Tumor
-0.2
865
Tumor
-0.2
923
Tumor
-0.2
616
Normal
-0.2
411
Tumor
-0.2
636
Normal
-0.2
953
Tumor
-0.2
554
Normal
-0.2
647
Tumor
-0.2
227
Tumor
-0.2
567
Tumor
-0.2
467
Tumor
-0.2
433
Tumor
-0.2
267
Tumor
-0.2
421
Tumor
-0.2
357
Tumor
-0.3
943
Tumor
-0.3
473
Tumor
-0.3
877
Tumor
-0.3
443
Tumor
-0.3
277
Tumor
-0.3
112
Tumor
-0.4
863
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
