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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ONECUT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ONECUT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
104.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
271
Tumor
2.3
231
Tumor
2.0
261
Tumor
1.9
277
Tumor
1.9
297
Tumor
1.9
671
Tumor
1.8
331
Tumor
1.8
262
Normal
1.7
257
Tumor
1.7
185
Tumor
1.7
268
Normal
1.7
635
Tumor
1.6
743
Tumor
1.6
636
Normal
1.5
258
Normal
1.5
131
Tumor
1.5
267
Tumor
1.5
171
Tumor
1.5
232
Normal
1.5
161
Tumor
1.5
615
Tumor
1.4
523
Tumor
1.4
698
Normal
1.4
313
Tumor
1.4
272
Normal
1.4
627
Tumor
1.3
343
Tumor
1.3
641
Tumor
1.3
618
Normal
1.3
186
Normal
1.3
1031
Tumor
1.3
665
Tumor
1.2
312
Normal
1.2
1025
Tumor
1.1
187
Tumor
1.1
445
Tumor
1.1
487
Tumor
1.1
661
Tumor
1.0
663
Tumor
1.0
647
Tumor
1.0
695
Tumor
1.0
411
Tumor
1.0
648
Normal
1.0
666
Normal
1.0
642
Normal
1.0
672
Normal
1.0
737
Tumor
1.0
221
Tumor
0.9
448
Normal
0.9
147
Tumor
0.9
662
Normal
0.9
664
Normal
0.8
937
Tumor
0.8
813
Tumor
0.8
314
Normal
0.8
497
Tumor
0.8
463
Tumor
0.8
148
Normal
0.8
332
Normal
0.8
431
Tumor
0.8
172
Normal
0.8
545
Tumor
0.8
628
Normal
0.8
921
Tumor
0.7
616
Normal
0.7
341
Tumor
0.7
188
Normal
0.7
425
Tumor
0.7
881
Tumor
0.7
162
Normal
0.7
1021
Tumor
0.7
533
Tumor
0.7
278
Normal
0.7
1013
Tumor
0.6
517
Tumor
0.6
727
Tumor
0.6
951
Tumor
0.6
573
Tumor
0.5
877
Tumor
0.5
483
Tumor
0.5
393
Tumor
0.5
571
Tumor
0.5
977
Tumor
0.5
923
Tumor
0.5
356
Normal
0.5
884
Normal
0.5
482
Normal
0.5
493
Tumor
0.4
435
Tumor
0.4
342
Normal
0.4
785
Tumor
0.4
367
Tumor
0.4
443
Tumor
0.4
713
Tumor
0.4
363
Tumor
0.4
527
Tumor
0.4
311
Tumor
0.4
112
Tumor
0.4
298
Normal
0.4
975
Tumor
0.4
217
Tumor
0.4
814
Normal
0.4
423
Tumor
0.4
914
Normal
0.4
328
Normal
0.3
477
Tumor
0.3
461
Tumor
0.3
462
Normal
0.3
472
Normal
0.3
965
Tumor
0.3
123
Tumor
0.3
433
Tumor
0.3
365
Tumor
0.3
387
Tumor
0.3
617
Tumor
0.3
1041
Tumor
0.3
777
Tumor
0.3
818
Normal
0.3
465
Tumor
0.3
1022
Normal
0.3
938
Normal
0.3
925
Tumor
0.3
481
Tumor
0.3
858
Normal
0.3
227
Tumor
0.3
141
Tumor
0.3
1045
Tumor
0.3
361
Tumor
0.3
344
Normal
0.2
447
Tumor
0.2
412
Normal
0.2
478
Normal
0.2
515
Tumor
0.2
537
Tumor
0.2
912
Normal
0.2
385
Tumor
0.2
741
Tumor
0.2
553
Tumor
0.2
755
Tumor
0.2
1026
Normal
0.2
563
Tumor
0.2
824
Normal
0.2
474
Normal
0.2
721
Tumor
0.2
926
Normal
0.2
364
Normal
0.2
135
Tumor
0.2
1042
Normal
0.2
534
Normal
0.2
1046
Normal
0.1
1032
Normal
0.1
357
Tumor
0.1
137
Tumor
0.1
913
Tumor
0.1
432
Normal
0.1
416
Normal
0.1
391
Tumor
0.1
473
Tumor
0.1
1027
Tumor
0.1
756
Normal
0.1
955
Tumor
0.1
383
Tumor
0.1
878
Normal
0.1
817
Tumor
0.1
195
Tumor
0.1
956
Normal
0.1
354
Normal
0.1
355
Tumor
0.1
883
Tumor
0.1
213
Tumor
0.1
915
Tumor
0.1
944
Normal
0.1
455
Tumor
0.1
567
Tumor
0.1
327
Tumor
0.1
738
Normal
0.1
415
Tumor
0.1
742
Normal
0.1
452
Normal
0.1
513
Tumor
0.1
395
Tumor
0.0
494
Normal
0.0
911
Tumor
0.0
922
Normal
0.0
358
Normal
0.0
436
Normal
0.0
1014
Normal
0.0
954
Normal
0.0
192
Normal
0.0
863
Tumor
0.0
528
Normal
0.0
554
Normal
0.0
196
Normal
0.0
815
Tumor
0.0
222
Normal
0.0
967
Tumor
0.0
546
Normal
0.0
963
Tumor
0.0
882
Normal
0.0
142
Normal
0.0
136
Normal
0.0
538
Normal
0.0
132
Normal
0.0
572
Normal
0.0
353
Tumor
0.0
484
Normal
0.0
924
Normal
0.0
564
Normal
0.0
778
Normal
0.0
685
Tumor
0.0
413
Tumor
0.0
286
Normal
0.0
746
Normal
0.0
214
Normal
0.0
716
Normal
0.0
1044
Normal
0.0
982
Normal
-0.1
146
Normal
-0.1
1015
Tumor
-0.1
285
Tumor
-0.1
224
Normal
-0.1
145
Tumor
-0.1
492
Normal
-0.1
366
Normal
-0.1
723
Tumor
-0.1
983
Tumor
-0.1
113
Tumor
-0.1
514
Normal
-0.1
686
Normal
-0.1
1028
Normal
-0.1
964
Normal
-0.1
918
Normal
-0.1
284
Normal
-0.1
981
Tumor
-0.1
218
Normal
-0.1
125
Tumor
-0.1
223
Tumor
-0.1
728
Normal
-0.1
574
Normal
-0.1
444
Normal
-0.1
714
Normal
-0.2
434
Normal
-0.2
191
Tumor
-0.2
917
Tumor
-0.2
984
Normal
-0.2
557
Tumor
-0.2
568
Normal
-0.2
446
Normal
-0.2
558
Normal
-0.2
916
Normal
-0.2
1016
Normal
-0.2
212
Normal
-0.2
414
Normal
-0.2
421
Tumor
-0.2
362
Normal
-0.2
526
Normal
-0.2
396
Normal
-0.2
696
Normal
-0.2
518
Normal
-0.2
722
Normal
-0.2
786
Normal
-0.2
488
Normal
-0.2
952
Normal
-0.2
524
Normal
-0.2
451
Tumor
-0.2
138
Normal
-0.2
516
Normal
-0.2
953
Tumor
-0.2
228
Normal
-0.2
1043
Tumor
-0.2
384
Normal
-0.2
392
Normal
-0.2
536
Normal
-0.2
424
Normal
-0.3
816
Normal
-0.3
978
Normal
-0.3
394
Normal
-0.3
744
Normal
-0.3
128
Normal
-0.3
498
Normal
-0.3
491
Tumor
-0.3
386
Normal
-0.3
376
Normal
-0.3
873
Tumor
-0.3
368
Normal
-0.3
464
Normal
-0.3
426
Normal
-0.3
428
Normal
-0.3
127
Tumor
-0.3
968
Normal
-0.3
111
Normal
-0.3
422
Normal
-0.3
124
Normal
-0.3
724
Normal
-0.4
388
Normal
-0.4
467
Tumor
-0.4
114
Normal
-0.4
375
Tumor
-0.4
471
Tumor
-0.4
466
Normal
-0.4
851
Tumor
-0.4
745
Tumor
-0.4
957
Tumor
-0.4
456
Normal
-0.4
126
Normal
-0.4
943
Tumor
-0.4
715
Tumor
-0.5
352
Normal
-0.5
857
Tumor
-0.5
862
Normal
-0.5
525
Tumor
-0.5
966
Normal
-0.5
976
Normal
-0.6
283
Tumor
-0.6
958
Normal
-0.6
867
Tumor
-0.6
697
Tumor
-0.6
535
Tumor
-0.7
865
Tumor
-0.7
874
Normal
-0.7
468
Normal
-0.7
852
Normal
-0.7
868
Normal
-0.8
351
Tumor
-0.8
864
Normal
-0.9
861
Tumor
-0.9
866
Normal
-0.9
823
Tumor
-1.0
211
Tumor
-1.1
427
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
