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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
268.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
241.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
219.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
213.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
213.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
209.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
190.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
187.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
183.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
177.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
174.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
173.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
169.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
166.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
157.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
157.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
155.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
154.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
153.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
149.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
148.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
147.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
146.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
145.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
145.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
144.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
143.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
142.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
141.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
139.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
138.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
137.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
137.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
135.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
135.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
133.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
133.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
133.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
133.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
133.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
132.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
132.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
132.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
129.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
128.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
128.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
128.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
128.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
127.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
126.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
125.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
124.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
123.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
123.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
123.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
122.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
122.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
122.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
122.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
121.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
120.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
120.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
120.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
120.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
119.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
118.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
117.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
116.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
115.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
115.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
114.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
114.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
113.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
113.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
111.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
109.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
109.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
109.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
109.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
108.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
107.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
107.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
107.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
106.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
106.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
105.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
104.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
104.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
103.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
103.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
103.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
103.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
102.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
102.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
102.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
102.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
101.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
101.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
101.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
101.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
101.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
100.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
100.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
100.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
99.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
99.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
99.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
98.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
98.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
97.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
97.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
97.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
97.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
97.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
97.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
97.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
96.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
96.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
96.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
96.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
95.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
95.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
95.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
95.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
94.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
94.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
94.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
92.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
92.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
92.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
91.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
91.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
90.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
90.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
90.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
90.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
89.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
89.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
89.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
89.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
89.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
89.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
89.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
88.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
88.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
88.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
88.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
87.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
87.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
87.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
87.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
87.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
86.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
86.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
86.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
85.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
85.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
84.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
84.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
84.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
84.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
84.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
82.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
82.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
81.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
81.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
81.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
80.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
80.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
80.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
80.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
80.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
80.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
79.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
79.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
79.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
78.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
78.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
77.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
77.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
77.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
76.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
76.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
76.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
75.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
75.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
75.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
75.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
75.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
75.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
74.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
74.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
74.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
73.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
73.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
72.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
72.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
72.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
72.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
72.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
72.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
72.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
71.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
71.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
71.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
71.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
71.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
71.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
71.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
70.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
70.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
70.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
70.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
70.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
70.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
69.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
69.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
69.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
69.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
69.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
68.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
68.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
68.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
68.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
67.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
67.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
67.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
67.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
67.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
67.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
67.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
66.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
66.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
66.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
65.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
64.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
64.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
64.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
64.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
63.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
63.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
63.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
63.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
62.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
62.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
62.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
62.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
61.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
61.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
61.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
61.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
60.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
60.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
59.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
58.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
58.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
58.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
58.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
57.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
57.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
56.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
56.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
56.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
56.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
55.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
55.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
55.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
55.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
54.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
54.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
53.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
52.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
52.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
51.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
49.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
49.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
48.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
48.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
48.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
48.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
47.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
46.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
46.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
44.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
42.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
41.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
37.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
37.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
36.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
30.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
29.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.7
Number of samples
231
Samples
Sample
Description
TPM
DO50802
0 years, male, NA, stage:2, alive, 930 days
166.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
152.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
146.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
145.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
142.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
133.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
129.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
124.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
122.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
121.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
120.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
120.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
120.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
119.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
118.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
116.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
114.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
113.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
109.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
108.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
107.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
105.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
104.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
104.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
104.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
103.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
103.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
101.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
101.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
100.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
99.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
99.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
98.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
98.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
97.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
97.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
97.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
97.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
97.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
96.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
96.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
95.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
94.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
93.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
92.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
92.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
92.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
91.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
91.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
91.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
91.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
91.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
91.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
91.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
91.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
90.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
90.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
89.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
88.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
88.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
88.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
87.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
86.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
86.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
86.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
86.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
86.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
86.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
85.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
85.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
85.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
85.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
84.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
84.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
84.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
84.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
83.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
83.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
83.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
83.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
83.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
82.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
82.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
82.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
81.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
81.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
80.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
80.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
80.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
80.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
79.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
78.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
78.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
78.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
76.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
76.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
76.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
76.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
76.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
76.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
75.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
75.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
75.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
74.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
74.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
74.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
74.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
74.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
74.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
74.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
73.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
73.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
73.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
72.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
72.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
72.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
72.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
71.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
71.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
71.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
71.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
71.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
71.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
71.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
71.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
70.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
70.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
70.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
70.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
70.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
69.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
69.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
69.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
69.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
69.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
69.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
68.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
68.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
68.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
68.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
68.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
68.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
68.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
67.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
66.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
66.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
66.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
66.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
66.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
66.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
65.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
65.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
65.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
65.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
64.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
63.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
63.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
63.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
62.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
61.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
61.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
60.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
60.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
60.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
59.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
59.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
59.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
59.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
59.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
58.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
58.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
58.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
58.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
57.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
56.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
56.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
56.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
56.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
55.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
54.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
54.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
54.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
54.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
53.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
52.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
52.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
52.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
52.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
51.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
50.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
50.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
50.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
48.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
44.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
44.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.5
545
Tumor
0.5
881
Tumor
0.5
357
Tumor
0.5
425
Tumor
0.5
661
Tumor
0.4
411
Tumor
0.4
355
Tumor
0.4
953
Tumor
0.4
983
Tumor
0.4
523
Tumor
0.4
921
Tumor
0.4
817
Tumor
0.4
413
Tumor
0.4
277
Tumor
0.4
443
Tumor
0.4
1025
Tumor
0.4
557
Tumor
0.3
937
Tumor
0.3
685
Tumor
0.3
1031
Tumor
0.3
515
Tumor
0.3
951
Tumor
0.3
447
Tumor
0.3
385
Tumor
0.3
877
Tumor
0.3
743
Tumor
0.3
131
Tumor
0.3
161
Tumor
0.3
331
Tumor
0.3
567
Tumor
0.3
497
Tumor
0.3
465
Tumor
0.3
125
Tumor
0.3
431
Tumor
0.3
271
Tumor
0.2
1021
Tumor
0.2
814
Normal
0.2
713
Tumor
0.2
815
Tumor
0.2
975
Tumor
0.2
977
Tumor
0.2
123
Tumor
0.2
965
Tumor
0.2
387
Tumor
0.2
1041
Tumor
0.2
967
Tumor
0.2
227
Tumor
0.2
267
Tumor
0.2
813
Tumor
0.2
367
Tumor
0.2
463
Tumor
0.2
313
Tumor
0.2
283
Tumor
0.2
493
Tumor
0.2
911
Tumor
0.2
467
Tumor
0.2
957
Tumor
0.2
695
Tumor
0.2
141
Tumor
0.2
867
Tumor
0.2
461
Tumor
0.2
553
Tumor
0.2
393
Tumor
0.2
883
Tumor
0.2
527
Tumor
0.2
647
Tumor
0.2
311
Tumor
0.2
517
Tumor
0.1
427
Tumor
0.1
861
Tumor
0.1
727
Tumor
0.1
391
Tumor
0.1
777
Tumor
0.1
135
Tumor
0.1
343
Tumor
0.1
635
Tumor
0.1
423
Tumor
0.1
1027
Tumor
0.1
715
Tumor
0.1
455
Tumor
0.1
112
Tumor
0.1
363
Tumor
0.1
297
Tumor
0.1
477
Tumor
0.1
755
Tumor
0.1
285
Tumor
0.1
471
Tumor
0.1
351
Tumor
0.1
917
Tumor
0.1
923
Tumor
0.1
147
Tumor
0.1
737
Tumor
0.1
746
Normal
0.1
433
Tumor
0.1
1043
Tumor
0.1
943
Tumor
0.0
665
Tumor
0.0
513
Tumor
0.0
213
Tumor
0.0
641
Tumor
0.0
421
Tumor
0.0
571
Tumor
0.0
483
Tumor
0.0
142
Normal
0.0
221
Tumor
0.0
113
Tumor
0.0
873
Tumor
0.0
671
Tumor
0.0
538
Normal
0.0
955
Tumor
0.0
697
Tumor
0.0
533
Tumor
0.0
537
Tumor
0.0
915
Tumor
0.0
412
Normal
0.0
395
Tumor
0.0
524
Normal
0.0
954
Normal
0.0
696
Normal
0.0
435
Tumor
0.0
925
Tumor
0.0
823
Tumor
0.0
721
Tumor
0.0
686
Normal
0.0
1028
Normal
0.0
716
Normal
0.0
563
Tumor
0.0
966
Normal
0.0
615
Tumor
0.0
128
Normal
0.0
452
Normal
0.0
498
Normal
0.0
535
Tumor
0.0
451
Tumor
0.0
724
Normal
0.0
785
Tumor
0.0
185
Tumor
0.0
756
Normal
0.0
1014
Normal
0.0
124
Normal
0.0
786
Normal
0.0
862
Normal
0.0
488
Normal
0.0
857
Tumor
0.0
851
Tumor
0.0
481
Tumor
0.0
1026
Normal
0.0
865
Tumor
0.0
984
Normal
0.0
1032
Normal
0.0
111
Normal
0.0
482
Normal
0.0
741
Tumor
0.0
698
Normal
-0.1
858
Normal
-0.1
195
Tumor
-0.1
528
Normal
-0.1
978
Normal
-0.1
938
Normal
-0.1
648
Normal
-0.1
342
Normal
-0.1
666
Normal
-0.1
924
Normal
-0.1
462
Normal
-0.1
356
Normal
-0.1
778
Normal
-0.1
738
Normal
-0.1
526
Normal
-0.1
392
Normal
-0.1
217
Tumor
-0.1
464
Normal
-0.1
376
Normal
-0.1
546
Normal
-0.1
878
Normal
-0.1
492
Normal
-0.1
286
Normal
-0.1
327
Tumor
-0.1
981
Tumor
-0.1
341
Tumor
-0.1
912
Normal
-0.1
963
Tumor
-0.1
714
Normal
-0.1
466
Normal
-0.1
1022
Normal
-0.1
964
Normal
-0.1
664
Normal
-0.1
536
Normal
-0.1
534
Normal
-0.1
944
Normal
-0.1
298
Normal
-0.1
882
Normal
-0.1
415
Tumor
-0.1
328
Normal
-0.1
976
Normal
-0.1
268
Normal
-0.1
314
Normal
-0.1
284
Normal
-0.1
231
Tumor
-0.1
434
Normal
-0.1
145
Tumor
-0.1
114
Normal
-0.1
968
Normal
-0.1
375
Tumor
-0.1
384
Normal
-0.1
913
Tumor
-0.1
554
Normal
-0.1
864
Normal
-0.1
491
Tumor
-0.1
353
Tumor
-0.1
617
Tumor
-0.1
818
Normal
-0.1
922
Normal
-0.1
518
Normal
-0.1
866
Normal
-0.1
278
Normal
-0.1
132
Normal
-0.1
422
Normal
-0.1
137
Tumor
-0.1
1042
Normal
-0.1
952
Normal
-0.1
516
Normal
-0.1
573
Tumor
-0.1
1046
Normal
-0.1
366
Normal
-0.1
191
Tumor
-0.1
616
Normal
-0.1
364
Normal
-0.1
572
Normal
-0.1
742
Normal
-0.1
436
Normal
-0.1
445
Tumor
-0.1
146
Normal
-0.1
228
Normal
-0.1
171
Tumor
-0.1
127
Tumor
-0.1
444
Normal
-0.1
456
Normal
-0.1
446
Normal
-0.1
662
Normal
-0.1
344
Normal
-0.1
568
Normal
-0.1
223
Tumor
-0.1
636
Normal
-0.1
484
Normal
-0.1
525
Tumor
-0.1
383
Tumor
-0.1
914
Normal
-0.1
958
Normal
-0.1
824
Normal
-0.1
1016
Normal
-0.1
187
Tumor
-0.1
628
Normal
-0.1
723
Tumor
-0.1
396
Normal
-0.1
472
Normal
-0.2
257
Tumor
-0.2
558
Normal
-0.2
663
Tumor
-0.2
126
Normal
-0.2
744
Normal
-0.2
982
Normal
-0.2
448
Normal
-0.2
926
Normal
-0.2
514
Normal
-0.2
196
Normal
-0.2
332
Normal
-0.2
162
Normal
-0.2
426
Normal
-0.2
224
Normal
-0.2
352
Normal
-0.2
627
Tumor
-0.2
884
Normal
-0.2
388
Normal
-0.2
916
Normal
-0.2
424
Normal
-0.2
138
Normal
-0.2
186
Normal
-0.2
816
Normal
-0.2
918
Normal
-0.2
478
Normal
-0.2
368
Normal
-0.2
874
Normal
-0.2
642
Normal
-0.2
362
Normal
-0.2
868
Normal
-0.2
1045
Tumor
-0.2
956
Normal
-0.2
365
Tumor
-0.2
852
Normal
-0.2
728
Normal
-0.2
494
Normal
-0.2
262
Normal
-0.2
148
Normal
-0.2
272
Normal
-0.2
258
Normal
-0.2
172
Normal
-0.2
432
Normal
-0.2
394
Normal
-0.2
1044
Normal
-0.2
722
Normal
-0.2
222
Normal
-0.2
386
Normal
-0.2
212
Normal
-0.2
474
Normal
-0.2
232
Normal
-0.2
136
Normal
-0.2
618
Normal
-0.2
358
Normal
-0.2
745
Tumor
-0.2
361
Tumor
-0.2
428
Normal
-0.2
218
Normal
-0.2
414
Normal
-0.2
468
Normal
-0.2
416
Normal
-0.2
1013
Tumor
-0.2
574
Normal
-0.3
188
Normal
-0.3
261
Tumor
-0.3
1015
Tumor
-0.3
214
Normal
-0.3
354
Normal
-0.3
312
Normal
-0.3
672
Normal
-0.3
564
Normal
-0.3
192
Normal
-0.3
473
Tumor
-0.4
487
Tumor
-0.4
863
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
