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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAPT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAPT1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
231
Samples
Sample
Description
TPM
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.1
1027
Tumor
1.1
915
Tumor
1.0
388
Normal
0.8
481
Tumor
0.8
484
Normal
0.8
518
Normal
0.7
534
Normal
0.7
494
Normal
0.7
392
Normal
0.7
553
Tumor
0.7
554
Normal
0.7
648
Normal
0.6
436
Normal
0.6
128
Normal
0.6
616
Normal
0.6
474
Normal
0.6
546
Normal
0.6
564
Normal
0.6
356
Normal
0.6
422
Normal
0.6
824
Normal
0.6
636
Normal
0.6
864
Normal
0.6
727
Tumor
0.6
572
Normal
0.6
452
Normal
0.6
568
Normal
0.6
882
Normal
0.6
866
Normal
0.6
148
Normal
0.6
1016
Normal
0.6
261
Tumor
0.6
426
Normal
0.5
414
Normal
0.5
1025
Tumor
0.5
462
Normal
0.5
526
Normal
0.5
571
Tumor
0.5
618
Normal
0.5
286
Normal
0.5
482
Normal
0.5
944
Normal
0.5
1022
Normal
0.5
664
Normal
0.5
456
Normal
0.5
394
Normal
0.5
232
Normal
0.5
714
Normal
0.5
528
Normal
0.5
742
Normal
0.5
314
Normal
0.5
396
Normal
0.5
358
Normal
0.5
952
Normal
0.5
464
Normal
0.5
628
Normal
0.5
514
Normal
0.5
412
Normal
0.5
695
Tumor
0.5
1032
Normal
0.5
364
Normal
0.4
111
Normal
0.4
982
Normal
0.4
1014
Normal
0.4
196
Normal
0.4
823
Tumor
0.4
466
Normal
0.4
1026
Normal
0.4
328
Normal
0.4
878
Normal
0.4
696
Normal
0.4
816
Normal
0.4
574
Normal
0.4
284
Normal
0.4
746
Normal
0.4
362
Normal
0.4
642
Normal
0.4
145
Tumor
0.4
186
Normal
0.4
977
Tumor
0.4
778
Normal
0.4
477
Tumor
0.4
446
Normal
0.4
448
Normal
0.4
558
Normal
0.4
1046
Normal
0.4
861
Tumor
0.4
228
Normal
0.4
938
Normal
0.4
376
Normal
0.4
468
Normal
0.4
964
Normal
0.4
728
Normal
0.4
354
Normal
0.4
818
Normal
0.4
523
Tumor
0.4
368
Normal
0.4
138
Normal
0.4
862
Normal
0.4
1028
Normal
0.4
298
Normal
0.4
472
Normal
0.4
662
Normal
0.4
424
Normal
0.4
786
Normal
0.4
278
Normal
0.4
686
Normal
0.4
487
Tumor
0.3
738
Normal
0.3
968
Normal
0.3
214
Normal
0.3
258
Normal
0.3
463
Tumor
0.3
386
Normal
0.3
958
Normal
0.3
722
Normal
0.3
615
Tumor
0.3
431
Tumor
0.3
1043
Tumor
0.3
723
Tumor
0.3
955
Tumor
0.3
874
Normal
0.3
432
Normal
0.3
1042
Normal
0.3
162
Normal
0.3
912
Normal
0.3
428
Normal
0.3
698
Normal
0.3
416
Normal
0.3
716
Normal
0.3
127
Tumor
0.3
132
Normal
0.3
327
Tumor
0.3
884
Normal
0.3
212
Normal
0.3
222
Normal
0.3
492
Normal
0.3
911
Tumor
0.3
868
Normal
0.3
966
Normal
0.3
443
Tumor
0.3
172
Normal
0.3
488
Normal
0.3
954
Normal
0.3
366
Normal
0.3
171
Tumor
0.2
1044
Normal
0.2
921
Tumor
0.2
384
Normal
0.2
984
Normal
0.2
863
Tumor
0.2
978
Normal
0.2
142
Normal
0.2
136
Normal
0.2
272
Normal
0.2
672
Normal
0.2
491
Tumor
0.2
342
Normal
0.2
393
Tumor
0.2
114
Normal
0.2
666
Normal
0.2
858
Normal
0.2
435
Tumor
0.2
146
Normal
0.2
813
Tumor
0.2
744
Normal
0.2
852
Normal
0.2
867
Tumor
0.2
981
Tumor
0.2
873
Tumor
0.2
517
Tumor
0.2
445
Tumor
0.2
538
Normal
0.2
957
Tumor
0.2
224
Normal
0.2
451
Tumor
0.2
257
Tumor
0.2
262
Normal
0.1
524
Normal
0.1
976
Normal
0.1
956
Normal
0.1
421
Tumor
0.1
914
Normal
0.1
715
Tumor
0.1
756
Normal
0.1
924
Normal
0.1
411
Tumor
0.1
1041
Tumor
0.1
352
Normal
0.1
922
Normal
0.1
332
Normal
0.1
857
Tumor
0.1
361
Tumor
0.0
918
Normal
0.0
433
Tumor
0.0
635
Tumor
0.0
188
Normal
0.0
498
Normal
0.0
563
Tumor
0.0
365
Tumor
0.0
1045
Tumor
0.0
785
Tumor
0.0
312
Normal
0.0
218
Normal
0.0
126
Normal
0.0
415
Tumor
0.0
737
Tumor
0.0
516
Normal
0.0
515
Tumor
0.0
434
Normal
0.0
493
Tumor
-0.1
478
Normal
-0.1
161
Tumor
-0.1
268
Normal
-0.1
1013
Tumor
-0.1
213
Tumor
-0.1
423
Tumor
-0.1
943
Tumor
-0.1
497
Tumor
-0.1
112
Tumor
-0.1
741
Tumor
-0.1
341
Tumor
-0.1
375
Tumor
-0.1
755
Tumor
-0.1
721
Tumor
-0.1
231
Tumor
-0.1
124
Normal
-0.1
344
Normal
-0.2
353
Tumor
-0.2
191
Tumor
-0.2
465
Tumor
-0.2
916
Normal
-0.2
444
Normal
-0.2
617
Tumor
-0.2
926
Normal
-0.2
195
Tumor
-0.2
277
Tumor
-0.2
814
Normal
-0.2
355
Tumor
-0.2
425
Tumor
-0.2
877
Tumor
-0.2
815
Tumor
-0.3
641
Tumor
-0.3
192
Normal
-0.3
537
Tumor
-0.3
937
Tumor
-0.3
685
Tumor
-0.3
313
Tumor
-0.3
113
Tumor
-0.3
527
Tumor
-0.3
297
Tumor
-0.3
975
Tumor
-0.3
697
Tumor
-0.3
383
Tumor
-0.3
923
Tumor
-0.3
135
Tumor
-0.3
963
Tumor
-0.3
627
Tumor
-0.3
131
Tumor
-0.3
647
Tumor
-0.3
187
Tumor
-0.4
427
Tumor
-0.4
925
Tumor
-0.4
267
Tumor
-0.4
147
Tumor
-0.4
467
Tumor
-0.4
455
Tumor
-0.4
271
Tumor
-0.4
533
Tumor
-0.5
141
Tumor
-0.5
137
Tumor
-0.5
965
Tumor
-0.5
217
Tumor
-0.5
665
Tumor
-0.5
953
Tumor
-0.5
123
Tumor
-0.5
387
Tumor
-0.5
724
Normal
-0.5
536
Normal
-0.5
967
Tumor
-0.5
567
Tumor
-0.5
395
Tumor
-0.5
851
Tumor
-0.6
513
Tumor
-0.6
663
Tumor
-0.6
125
Tumor
-0.6
223
Tumor
-0.6
743
Tumor
-0.6
525
Tumor
-0.6
311
Tumor
-0.6
447
Tumor
-0.6
483
Tumor
-0.6
713
Tumor
-0.7
777
Tumor
-0.7
1031
Tumor
-0.7
983
Tumor
-0.7
221
Tumor
-0.7
343
Tumor
-0.7
391
Tumor
-0.7
385
Tumor
-0.7
1021
Tumor
-0.7
951
Tumor
-0.7
357
Tumor
-0.7
461
Tumor
-0.8
817
Tumor
-0.8
557
Tumor
-0.8
351
Tumor
-0.8
185
Tumor
-0.8
881
Tumor
-0.8
545
Tumor
-0.8
1015
Tumor
-0.8
865
Tumor
-0.9
413
Tumor
-0.9
331
Tumor
-0.9
283
Tumor
-0.9
913
Tumor
-0.9
917
Tumor
-0.9
367
Tumor
-1.0
573
Tumor
-1.0
671
Tumor
-1.0
471
Tumor
-1.0
363
Tumor
-1.0
661
Tumor
-1.1
473
Tumor
-1.1
285
Tumor
-1.1
883
Tumor
-1.2
211
Tumor
-1.2
227
Tumor
-1.2
535
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
