MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:26.2 nTPM
GTEx:10.9 nTPM
FANTOM5:33.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
2586 Male, age 75, left hemisphere 26.8
2828 Female, age 72, unknown 25.5
1870 Female, age 42, unknown 24.8
1833 Male, age 53, unknown 24.5
1830 Male, age 51, unknown 24.3
2666 Male, age 74, left hemisphere 24.0
1827 Male, age 72, unknown 20.0
2019 Male, age 18, unknown 19.6
2411 Female, age 72, unknown 19.0
2219 Male, age 76, both hemispheres 14.3
Dorsal raphe nucleus
nTPM: 26.2
1828 Male, age 53, unknown 29.0
2016 Female, age 72, unknown 27.7
2047 Male, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 24.1
2298 Female, age 72, unknown 22.9
Inferior colliculus
nTPM: 24.4
1848 Female, age 42, unknown 26.3
1890 Male, age 53, unknown 26.2
2097 Female, age 72, unknown 22.7
2849 Male, age 72, unknown 22.3
Median raphe nucleus
nTPM: 23.3
2220 Male, age 76, midline 23.3
Periaquaductal grey, anterior
nTPM: 21.7
1947 Male, age 18, unknown 23.9
1795 Male, age 51, unknown 22.1
2502 Female, age 75, unknown 19.2
Periaquaductal grey, dorsal
nTPM: 23.7
2850 Male, age 76, both hemispheres 24.5
1831 Male, age 72, unknown 24.0
2464 Female, age 72, unknown 23.1
1840 Male, age 53, unknown 23.0
Periaquaductal grey, lateral
nTPM: 23.5
2140 Male, age 76, both hemispheres 25.4
2053 Male, age 18, unknown 23.4
2272 Male, age 74, both hemispheres 21.7
Pretectal area
nTPM: 20.7
2316 Male, age 76, right hemisphere 24.5
2825 Male, age 18, unknown 24.5
2224 Female, age 72, unknown 23.6
2667 Female, age 75, unknown 22.1
2273 Male, age 74, both hemispheres 21.5
2407 Male, age 75, both hemispheres 20.2
1817 Female, age 42, unknown 19.8
1944 Female, age 72, unknown 19.2
1815 Male, age 53, unknown 19.1
2007 Male, age 72, unknown 17.5
1816 Male, age 51, unknown 16.0
Red nucleus
nTPM: 24.4
1954 Female, age 42, unknown 27.8
2769 Male, age 72, unknown 27.3
1865 Male, age 51, unknown 26.6
2823 Male, age 76, right hemisphere 26.6
2227 Male, age 72, unknown 26.1
1821 Female, age 72, unknown 26.0
1904 Male, age 53, unknown 25.6
2725 Female, age 75, unknown 25.2
2503 Female, age 72, unknown 24.3
2785 Male, age 18, unknown 20.3
2588 Male, age 74, left hemisphere 18.7
2584 Male, age 75, left hemisphere 18.3
Substantia nigra
nTPM: 25.1
2699 Male, age 18, unknown 31.0
2409 Female, age 72, unknown 29.5
1916 Female, age 42, unknown 29.3
2590 Female, age 75, unknown 25.4
2241 Male, age 72, unknown 25.3
2583 Male, age 75, right hemisphere 25.0
2665 Male, age 74, both hemispheres 23.6
1851 Male, age 51, unknown 22.7
1889 Female, age 72, unknown 20.9
1941 Male, age 53, unknown 18.2
Superior colliculus
nTPM: 21.4
1913 Female, age 42, unknown 25.5
1839 Male, age 51, unknown 24.0
1995 Male, age 72, unknown 22.7
2087 Female, age 72, unknown 21.3
2587 Male, age 74, left hemisphere 21.0
2668 Female, age 75, unknown 21.0
1796 Male, age 53, unknown 20.9
1895 Male, age 76, right hemisphere 20.8
2664 Male, age 75, both hemispheres 19.7
2261 Male, age 18, unknown 17.2
Ventral tegmental area
nTPM: 23.3
2021 Male, age 53, unknown 25.1
1915 Female, age 42, unknown 24.8
1942 Male, age 51, unknown 23.3
2218 Male, age 76, both hemispheres 23.1
2223 Female, age 72, unknown 21.8
2410 Female, age 72, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 28.0
Min nTPM: 2.4
Std nTPM: 4.2
Median nTPM: 10.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 28.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 26.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 21.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 20.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 20.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 19.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 19.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 19.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org