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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.8
nTPM
HPA Brain:
36.6
nTPM
GTEx:
24.8
nTPM
FANTOM5:
6.9
Scaled Tags Per Million
Pig:
57.6
nTPM
Mouse:
66.0
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 26.6
2219
Male, age 76, both hemispheres
45.6
1827
Male, age 72, unknown
35.2
2828
Female, age 72, unknown
28.4
2411
Female, age 72, unknown
26.7
2666
Male, age 74, left hemisphere
25.4
2586
Male, age 75, left hemisphere
24.7
1870
Female, age 42, unknown
22.7
1833
Male, age 53, unknown
21.4
1830
Male, age 51, unknown
19.7
2019
Male, age 18, unknown
16.6
Dorsal raphe nucleus nTPM: 29.2
2298
Female, age 72, unknown
41.6
2047
Male, age 72, unknown
32.6
2750
Male, age 76, both hemispheres
28.5
1828
Male, age 53, unknown
24.8
2016
Female, age 72, unknown
18.3
Inferior colliculus nTPM: 21.6
2849
Male, age 72, unknown
26.3
1848
Female, age 42, unknown
24.2
2097
Female, age 72, unknown
18.9
1890
Male, age 53, unknown
16.8
Median raphe nucleus nTPM: 36.6
2220
Male, age 76, midline
36.6
Periaquaductal grey, anterior nTPM: 33.1
1795
Male, age 51, unknown
38.5
1947
Male, age 18, unknown
34.6
2502
Female, age 75, unknown
26.3
Periaquaductal grey, dorsal nTPM: 25.2
1840
Male, age 53, unknown
33.0
2850
Male, age 76, both hemispheres
24.8
2464
Female, age 72, unknown
21.5
1831
Male, age 72, unknown
21.3
Periaquaductal grey, lateral nTPM: 24.4
2140
Male, age 76, both hemispheres
25.2
2053
Male, age 18, unknown
25.0
2272
Male, age 74, both hemispheres
23.0
Pretectal area nTPM: 29.0
1944
Female, age 72, unknown
41.8
1816
Male, age 51, unknown
37.8
2007
Male, age 72, unknown
35.6
2224
Female, age 72, unknown
34.9
2667
Female, age 75, unknown
28.9
2825
Male, age 18, unknown
28.4
1815
Male, age 53, unknown
26.0
1817
Female, age 42, unknown
25.4
2316
Male, age 76, right hemisphere
20.9
2273
Male, age 74, both hemispheres
20.8
2407
Male, age 75, both hemispheres
18.5
Red nucleus nTPM: 14.3
2584
Male, age 75, left hemisphere
21.1
2725
Female, age 75, unknown
20.4
2785
Male, age 18, unknown
17.9
2588
Male, age 74, left hemisphere
17.8
2227
Male, age 72, unknown
13.7
1954
Female, age 42, unknown
12.8
2503
Female, age 72, unknown
12.6
2769
Male, age 72, unknown
12.4
1821
Female, age 72, unknown
11.8
1904
Male, age 53, unknown
11.1
2823
Male, age 76, right hemisphere
9.8
1865
Male, age 51, unknown
9.6
Substantia nigra nTPM: 34.4
2665
Male, age 74, both hemispheres
56.3
1916
Female, age 42, unknown
46.9
1941
Male, age 53, unknown
45.4
1851
Male, age 51, unknown
37.7
1889
Female, age 72, unknown
31.9
2409
Female, age 72, unknown
28.6
2699
Male, age 18, unknown
28.5
2241
Male, age 72, unknown
26.6
2583
Male, age 75, right hemisphere
22.8
2590
Female, age 75, unknown
19.8
Superior colliculus nTPM: 25.7
1796
Male, age 53, unknown
35.2
2668
Female, age 75, unknown
34.0
2261
Male, age 18, unknown
31.0
2087
Female, age 72, unknown
29.3
1895
Male, age 76, right hemisphere
25.6
2664
Male, age 75, both hemispheres
25.1
1839
Male, age 51, unknown
24.1
2587
Male, age 74, left hemisphere
19.2
1913
Female, age 42, unknown
17.4
1995
Male, age 72, unknown
15.7
Ventral tegmental area nTPM: 31.3
2218
Male, age 76, both hemispheres
40.5
1915
Female, age 42, unknown
35.8
2410
Female, age 72, unknown
32.1
1942
Male, age 51, unknown
31.7
2021
Male, age 53, unknown
26.7
2223
Female, age 72, unknown
21.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 24.8
Samples: 139
Max nTPM: 95.2
Min nTPM: 4.1
Std nTPM: 14.7
Median nTPM: 22.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
95.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
66.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
64.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
58.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
56.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
53.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
53.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
50.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
48.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
48.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
48.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
47.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
46.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
45.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
44.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
43.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
42.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
42.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
41.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
40.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
39.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
39.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
39.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
39.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
38.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
37.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
37.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
37.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
36.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
34.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
33.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
32.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
32.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
32.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
32.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
32.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
32.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
31.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
30.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
30.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
30.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
30.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
30.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
29.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
29.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
29.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
29.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
28.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
28.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
27.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
27.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
27.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
27.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
26.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
25.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
25.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
24.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
24.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
24.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
24.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
23.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
23.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
23.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
23.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
23.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
22.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
22.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
22.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
22.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
22.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
21.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
21.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
19.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
19.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
18.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
18.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
18.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
18.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
18.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
17.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
17.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
17.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
17.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
17.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
17.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
17.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
16.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
15.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
15.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
15.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
14.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
14.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
14.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
14.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
13.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
13.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
13.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
13.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
12.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
12.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
12.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
12.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
11.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
11.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
11.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
11.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
11.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
11.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
10.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
10.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
10.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
10.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
10.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
10.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
9.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
8.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
8.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
7.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
7.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
7.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
4.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 66.0
Samples: 4
Max nTPM: 72.2
Min nTPM: 57.9
Sample A
Male
67.8
Sample B
Male
65.9
Sample C
Female
57.9
Sample D
Female
72.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.