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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPS1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
70.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
258.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
253.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
183.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
179.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
171.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
165.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
154.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
148.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
148.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
146.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
139.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
137.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
137.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
137.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
136.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
136.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
133.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
129.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
129.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
128.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
128.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
127.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
126.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
124.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
123.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
120.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
120.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
118.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
118.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
117.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
115.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
115.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
114.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
114.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
114.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
112.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
112.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
111.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
111.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
109.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
109.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
108.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
108.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
108.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
107.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
106.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
106.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
105.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
104.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
103.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
103.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
103.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
101.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
101.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
100.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
99.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
99.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
99.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
99.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
98.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
98.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
98.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
97.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
96.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
96.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
95.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
94.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
94.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
94.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
94.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
93.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
93.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
92.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
92.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
91.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
90.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
90.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
89.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
89.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
88.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
88.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
88.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
88.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
86.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
86.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
85.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
84.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
84.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
84.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
84.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
84.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
84.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
83.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
83.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
82.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
82.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
82.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
81.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
81.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
80.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
80.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
80.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
80.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
80.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
80.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
79.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
79.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
79.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
79.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
79.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
78.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
78.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
78.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
78.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
78.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
78.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
78.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
78.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
77.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
76.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
76.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
75.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
75.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
75.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
75.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
75.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
74.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
74.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
74.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
73.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
72.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
72.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
72.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
72.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
72.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
72.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
72.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
71.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
71.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
70.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
70.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
69.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
69.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
69.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
68.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
68.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
68.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
67.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
67.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
66.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
66.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
66.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
66.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
66.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
65.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
65.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
64.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
64.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
64.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
64.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
64.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
64.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
64.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
64.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
63.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
63.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
63.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
63.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
63.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
63.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
63.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
62.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
62.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
62.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
62.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
62.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
62.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
61.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
61.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
61.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
60.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
60.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
60.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
60.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
59.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
59.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
59.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
59.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
58.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
58.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
58.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
58.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
58.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
58.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
58.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
57.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
57.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
57.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
56.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
56.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
56.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
55.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
55.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
55.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
55.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
54.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
54.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
54.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
54.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
54.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
54.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
54.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
54.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
54.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
54.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
53.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
53.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
52.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
51.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
51.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
51.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
51.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
51.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
51.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
51.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
51.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
51.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
50.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
50.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
50.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
49.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
49.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
49.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
49.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
48.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
48.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
48.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
48.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
47.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
47.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
47.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
46.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
46.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
46.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
46.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
45.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
44.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
42.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
42.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
42.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
41.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
39.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
39.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
39.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
39.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
38.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
38.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
37.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
37.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
37.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
36.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
34.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.3
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
198.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
165.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
147.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
143.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
136.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
130.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
129.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
123.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
115.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
115.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
110.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
109.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
109.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
107.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
105.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
103.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
102.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
97.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
97.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
96.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
94.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
94.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
92.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
92.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
87.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
86.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
86.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
85.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
85.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
85.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
85.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
84.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
82.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
81.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
80.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
80.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
79.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
79.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
77.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
77.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
77.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
77.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
76.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
76.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
73.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
73.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
73.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
71.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
70.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
70.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
70.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
69.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
68.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
67.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
67.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
67.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
67.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
66.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
65.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
65.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
65.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
63.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
63.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
63.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
63.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
62.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
61.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
61.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
61.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
60.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
60.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
60.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
60.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
59.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
59.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
59.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
58.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
57.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
57.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
56.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
56.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
56.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
56.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
56.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
55.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
55.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
54.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
53.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
53.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
53.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
52.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
52.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
51.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
51.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
51.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
50.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
50.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
50.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
49.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
48.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
48.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
48.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
48.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
47.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
46.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
46.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
46.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
45.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
45.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
44.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
44.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
44.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
44.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
44.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
42.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
42.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
41.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
40.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.6
685
Tumor
0.5
815
Tumor
0.4
327
Tumor
0.4
663
Tumor
0.4
261
Tumor
0.4
285
Tumor
0.4
1013
Tumor
0.4
283
Tumor
0.4
123
Tumor
0.4
313
Tumor
0.4
915
Tumor
0.3
353
Tumor
0.3
147
Tumor
0.3
965
Tumor
0.3
131
Tumor
0.3
192
Normal
0.3
957
Tumor
0.3
1021
Tumor
0.3
755
Tumor
0.3
737
Tumor
0.3
877
Tumor
0.3
482
Normal
0.3
137
Tumor
0.2
355
Tumor
0.2
777
Tumor
0.2
477
Tumor
0.2
956
Normal
0.2
195
Tumor
0.2
223
Tumor
0.2
473
Tumor
0.2
1043
Tumor
0.2
724
Normal
0.2
481
Tumor
0.2
756
Normal
0.2
816
Normal
0.2
714
Normal
0.2
351
Tumor
0.2
818
Normal
0.2
924
Normal
0.2
715
Tumor
0.2
425
Tumor
0.2
745
Tumor
0.2
824
Normal
0.2
328
Normal
0.2
722
Normal
0.2
212
Normal
0.2
1046
Normal
0.2
912
Normal
0.2
257
Tumor
0.2
743
Tumor
0.2
546
Normal
0.2
436
Normal
0.2
1025
Tumor
0.2
952
Normal
0.2
981
Tumor
0.2
862
Normal
0.2
557
Tumor
0.2
1042
Normal
0.2
696
Normal
0.2
517
Tumor
0.2
567
Tumor
0.2
364
Normal
0.2
411
Tumor
0.2
866
Normal
0.2
728
Normal
0.2
636
Normal
0.2
868
Normal
0.2
917
Tumor
0.2
686
Normal
0.2
331
Tumor
0.2
516
Normal
0.2
661
Tumor
0.2
478
Normal
0.1
955
Tumor
0.1
472
Normal
0.1
882
Normal
0.1
558
Normal
0.1
435
Tumor
0.1
616
Normal
0.1
864
Normal
0.1
916
Normal
0.1
665
Tumor
0.1
716
Normal
0.1
571
Tumor
0.1
416
Normal
0.1
146
Normal
0.1
618
Normal
0.1
1026
Normal
0.1
415
Tumor
0.1
277
Tumor
0.1
851
Tumor
0.1
132
Normal
0.1
746
Normal
0.1
431
Tumor
0.1
721
Tumor
0.1
878
Normal
0.1
227
Tumor
0.1
865
Tumor
0.1
136
Normal
0.1
363
Tumor
0.1
386
Normal
0.1
874
Normal
0.1
456
Normal
0.1
545
Tumor
0.1
944
Normal
0.1
1044
Normal
0.1
914
Normal
0.1
884
Normal
0.1
926
Normal
0.1
863
Tumor
0.1
527
Tumor
0.1
484
Normal
0.1
224
Normal
0.1
474
Normal
0.1
628
Normal
0.1
113
Tumor
0.1
642
Normal
0.1
497
Tumor
0.1
697
Tumor
0.1
448
Normal
0.1
786
Normal
0.1
742
Normal
0.1
778
Normal
0.1
648
Normal
0.1
447
Tumor
0.1
568
Normal
0.1
953
Tumor
0.1
738
Normal
0.1
462
Normal
0.1
967
Tumor
0.1
938
Normal
0.1
413
Tumor
0.1
1032
Normal
0.1
723
Tumor
0.1
852
Normal
0.1
366
Normal
0.1
354
Normal
0.1
228
Normal
0.1
518
Normal
0.1
356
Normal
0.1
298
Normal
0.1
368
Normal
0.1
468
Normal
0.1
434
Normal
0.1
162
Normal
0.1
534
Normal
0.1
662
Normal
0.1
664
Normal
0.1
698
Normal
0.1
376
Normal
0.1
526
Normal
0.1
937
Tumor
0.1
392
Normal
0.1
138
Normal
0.1
672
Normal
0.1
362
Normal
0.1
432
Normal
0.1
466
Normal
0.1
464
Normal
0.1
394
Normal
0.1
352
Normal
0.1
1031
Tumor
0.1
421
Tumor
0.1
921
Tumor
0.1
918
Normal
0.1
488
Normal
0.0
188
Normal
0.0
861
Tumor
0.0
533
Tumor
0.0
314
Normal
0.0
857
Tumor
0.0
925
Tumor
0.0
111
Normal
0.0
272
Normal
0.0
412
Normal
0.0
858
Normal
0.0
148
Normal
0.0
278
Normal
0.0
463
Tumor
0.0
172
Normal
0.0
881
Tumor
0.0
191
Tumor
0.0
492
Normal
0.0
741
Tumor
0.0
528
Normal
0.0
114
Normal
0.0
214
Normal
0.0
537
Tumor
0.0
513
Tumor
0.0
211
Tumor
0.0
635
Tumor
0.0
271
Tumor
0.0
727
Tumor
0.0
424
Normal
0.0
1022
Normal
0.0
867
Tumor
0.0
572
Normal
0.0
873
Tumor
0.0
574
Normal
0.0
525
Tumor
0.0
344
Normal
0.0
142
Normal
0.0
222
Normal
0.0
564
Normal
0.0
923
Tumor
0.0
554
Normal
0.0
538
Normal
0.0
666
Normal
0.0
342
Normal
0.0
365
Tumor
0.0
514
Normal
0.0
498
Normal
0.0
422
Normal
0.0
341
Tumor
0.0
467
Tumor
0.0
444
Normal
0.0
268
Normal
0.0
922
Normal
0.0
713
Tumor
0.0
311
Tumor
0.0
671
Tumor
0.0
145
Tumor
0.0
455
Tumor
0.0
126
Normal
0.0
128
Normal
0.0
493
Tumor
0.0
483
Tumor
0.0
258
Normal
0.0
213
Tumor
0.0
414
Normal
0.0
384
Normal
0.0
171
Tumor
0.0
982
Normal
0.0
647
Tumor
0.0
976
Normal
0.0
388
Normal
0.0
262
Normal
0.0
127
Tumor
0.0
1028
Normal
0.0
196
Normal
0.0
428
Normal
0.0
536
Normal
0.0
231
Tumor
0.0
744
Normal
0.0
393
Tumor
0.0
615
Tumor
0.0
286
Normal
0.0
391
Tumor
0.0
523
Tumor
0.0
943
Tumor
0.0
641
Tumor
0.0
966
Normal
0.0
553
Tumor
0.0
312
Normal
0.0
471
Tumor
0.0
494
Normal
0.0
446
Normal
0.0
387
Tumor
0.0
375
Tumor
0.0
361
Tumor
0.0
221
Tumor
0.0
1014
Normal
0.0
1016
Normal
0.0
284
Normal
0.0
186
Normal
0.0
978
Normal
0.0
217
Tumor
0.0
232
Normal
0.0
358
Normal
0.0
451
Tumor
0.0
124
Normal
0.0
297
Tumor
0.0
954
Normal
0.0
135
Tumor
0.0
524
Normal
0.0
573
Tumor
0.0
396
Normal
0.0
951
Tumor
-0.1
695
Tumor
-0.1
975
Tumor
-0.1
426
Normal
-0.1
187
Tumor
-0.1
395
Tumor
-0.1
983
Tumor
-0.1
443
Tumor
-0.1
977
Tumor
-0.1
535
Tumor
-0.1
963
Tumor
-0.1
617
Tumor
-0.1
984
Normal
-0.1
911
Tumor
-0.1
218
Normal
-0.1
491
Tumor
-0.1
1045
Tumor
-0.1
383
Tumor
-0.1
461
Tumor
-0.1
883
Tumor
-0.1
427
Tumor
-0.1
445
Tumor
-0.1
785
Tumor
-0.1
964
Normal
-0.1
433
Tumor
-0.1
452
Normal
-0.1
958
Normal
-0.1
185
Tumor
-0.1
968
Normal
-0.1
515
Tumor
-0.1
112
Tumor
-0.1
563
Tumor
-0.1
423
Tumor
-0.1
141
Tumor
-0.1
161
Tumor
-0.1
357
Tumor
-0.1
367
Tumor
-0.1
814
Normal
-0.2
823
Tumor
-0.2
125
Tumor
-0.2
627
Tumor
-0.2
813
Tumor
-0.2
385
Tumor
-0.2
343
Tumor
-0.2
1015
Tumor
-0.2
487
Tumor
-0.2
332
Normal
-0.2
267
Tumor
-0.2
913
Tumor
-0.2
465
Tumor
-0.2
1041
Tumor
-0.3
817
Tumor
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.