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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRRC45 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
59.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRRC45 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
231
Samples
Sample
Description
TPM
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
38.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
361
Tumor
1.2
477
Tumor
0.8
428
Normal
0.8
423
Tumor
0.7
1045
Tumor
0.7
188
Normal
0.7
357
Tumor
0.7
343
Tumor
0.7
185
Tumor
0.7
112
Tumor
0.6
448
Normal
0.6
424
Normal
0.6
138
Normal
0.6
727
Tumor
0.6
938
Normal
0.6
386
Normal
0.6
186
Normal
0.5
824
Normal
0.5
412
Normal
0.5
852
Normal
0.5
171
Tumor
0.5
951
Tumor
0.5
815
Tumor
0.5
863
Tumor
0.5
161
Tumor
0.5
137
Tumor
0.4
187
Tumor
0.4
957
Tumor
0.4
425
Tumor
0.4
426
Normal
0.4
363
Tumor
0.4
258
Normal
0.4
965
Tumor
0.4
351
Tumor
0.4
818
Normal
0.4
492
Normal
0.4
162
Normal
0.4
491
Tumor
0.4
341
Tumor
0.4
858
Normal
0.4
146
Normal
0.4
344
Normal
0.4
342
Normal
0.3
356
Normal
0.3
148
Normal
0.3
358
Normal
0.3
232
Normal
0.3
741
Tumor
0.3
943
Tumor
0.3
328
Normal
0.3
816
Normal
0.3
416
Normal
0.3
473
Tumor
0.3
271
Tumor
0.3
954
Normal
0.3
147
Tumor
0.3
172
Normal
0.3
494
Normal
0.3
714
Normal
0.3
385
Tumor
0.3
284
Normal
0.3
915
Tumor
0.3
388
Normal
0.3
283
Tumor
0.3
498
Normal
0.3
278
Normal
0.3
923
Tumor
0.3
484
Normal
0.3
396
Normal
0.3
922
Normal
0.3
355
Tumor
0.3
272
Normal
0.3
1027
Tumor
0.3
314
Normal
0.2
493
Tumor
0.2
737
Tumor
0.2
488
Normal
0.2
327
Tumor
0.2
268
Normal
0.2
1032
Normal
0.2
698
Normal
0.2
1014
Normal
0.2
462
Normal
0.2
916
Normal
0.2
883
Tumor
0.2
364
Normal
0.2
286
Normal
0.2
728
Normal
0.2
533
Tumor
0.2
926
Normal
0.2
723
Tumor
0.2
636
Normal
0.2
526
Normal
0.2
376
Normal
0.2
978
Normal
0.2
257
Tumor
0.2
481
Tumor
0.2
411
Tumor
0.2
375
Tumor
0.2
142
Normal
0.2
393
Tumor
0.2
756
Normal
0.2
365
Tumor
0.2
482
Normal
0.2
1016
Normal
0.2
786
Normal
0.2
421
Tumor
0.2
472
Normal
0.2
478
Normal
0.2
395
Tumor
0.2
387
Tumor
0.2
924
Normal
0.2
958
Normal
0.2
261
Tumor
0.2
868
Normal
0.2
384
Normal
0.2
212
Normal
0.2
352
Normal
0.2
1046
Normal
0.2
516
Normal
0.1
956
Normal
0.1
211
Tumor
0.1
912
Normal
0.1
722
Normal
0.1
483
Tumor
0.1
518
Normal
0.1
366
Normal
0.1
228
Normal
0.1
262
Normal
0.1
862
Normal
0.1
131
Tumor
0.1
615
Tumor
0.1
132
Normal
0.1
224
Normal
0.1
267
Tumor
0.1
564
Normal
0.1
968
Normal
0.1
867
Tumor
0.1
882
Normal
0.1
878
Normal
0.1
746
Normal
0.1
332
Normal
0.1
312
Normal
0.1
362
Normal
0.1
742
Normal
0.1
785
Tumor
0.1
743
Tumor
0.1
925
Tumor
0.1
445
Tumor
0.1
415
Tumor
0.1
745
Tumor
0.1
145
Tumor
0.1
447
Tumor
0.1
394
Normal
0.1
285
Tumor
0.1
738
Normal
0.1
921
Tumor
0.1
716
Normal
0.1
368
Normal
0.1
443
Tumor
0.1
1042
Normal
0.1
414
Normal
0.1
864
Normal
0.1
1026
Normal
0.1
778
Normal
0.1
884
Normal
0.1
955
Tumor
0.1
918
Normal
0.1
392
Normal
0.1
982
Normal
0.1
952
Normal
0.1
514
Normal
0.1
721
Tumor
0.0
744
Normal
0.0
474
Normal
0.0
1013
Tumor
0.0
983
Tumor
0.0
981
Tumor
0.0
136
Normal
0.0
313
Tumor
0.0
435
Tumor
0.0
686
Normal
0.0
857
Tumor
0.0
141
Tumor
0.0
1044
Normal
0.0
666
Normal
0.0
877
Tumor
0.0
964
Normal
0.0
298
Normal
0.0
984
Normal
0.0
513
Tumor
0.0
461
Tumor
0.0
436
Normal
0.0
354
Normal
0.0
231
Tumor
0.0
976
Normal
0.0
524
Normal
0.0
574
Normal
0.0
1028
Normal
0.0
715
Tumor
0.0
413
Tumor
0.0
573
Tumor
0.0
873
Tumor
0.0
967
Tumor
0.0
874
Normal
0.0
1022
Normal
0.0
471
Tumor
0.0
755
Tumor
0.0
648
Normal
0.0
497
Tumor
0.0
777
Tumor
0.0
865
Tumor
0.0
695
Tumor
0.0
866
Normal
0.0
944
Normal
0.0
196
Normal
0.0
427
Tumor
-0.1
696
Normal
-0.1
1015
Tumor
-0.1
966
Normal
-0.1
1041
Tumor
-0.1
642
Normal
-0.1
618
Normal
-0.1
536
Normal
-0.1
664
Normal
-0.1
572
Normal
-0.1
222
Normal
-0.1
528
Normal
-0.1
422
Normal
-0.1
277
Tumor
-0.1
311
Tumor
-0.1
917
Tumor
-0.1
662
Normal
-0.1
534
Normal
-0.1
192
Normal
-0.1
331
Tumor
-0.1
367
Tumor
-0.1
221
Tumor
-0.1
515
Tumor
-0.1
391
Tumor
-0.1
953
Tumor
-0.1
213
Tumor
-0.1
814
Normal
-0.1
911
Tumor
-0.1
444
Normal
-0.1
617
Tumor
-0.1
135
Tumor
-0.1
913
Tumor
-0.2
635
Tumor
-0.2
383
Tumor
-0.2
487
Tumor
-0.2
627
Tumor
-0.2
195
Tumor
-0.2
446
Normal
-0.2
214
Normal
-0.2
672
Normal
-0.2
1021
Tumor
-0.2
963
Tumor
-0.2
914
Normal
-0.2
432
Normal
-0.2
975
Tumor
-0.2
1031
Tumor
-0.2
616
Normal
-0.2
218
Normal
-0.2
297
Tumor
-0.2
571
Tumor
-0.2
525
Tumor
-0.2
227
Tumor
-0.2
937
Tumor
-0.2
353
Tumor
-0.3
434
Normal
-0.3
977
Tumor
-0.3
881
Tumor
-0.3
433
Tumor
-0.3
661
Tumor
-0.3
671
Tumor
-0.3
628
Normal
-0.3
823
Tumor
-0.3
568
Normal
-0.4
647
Tumor
-0.4
663
Tumor
-0.4
813
Tumor
-0.4
685
Tumor
-0.4
861
Tumor
-0.4
527
Tumor
-0.4
553
Tumor
-0.4
697
Tumor
-0.4
546
Normal
-0.4
713
Tumor
-0.4
523
Tumor
-0.5
431
Tumor
-0.5
724
Normal
-0.5
554
Normal
-0.5
563
Tumor
-0.5
557
Tumor
-0.5
191
Tumor
-0.5
851
Tumor
-0.5
538
Normal
-0.5
217
Tumor
-0.6
126
Normal
-0.6
641
Tumor
-0.6
223
Tumor
-0.6
665
Tumor
-0.6
1025
Tumor
-0.6
1043
Tumor
-0.6
124
Normal
-0.7
535
Tumor
-0.7
114
Normal
-0.7
517
Tumor
-0.7
537
Tumor
-0.7
545
Tumor
-0.7
567
Tumor
-0.8
817
Tumor
-0.9
123
Tumor
-0.9
558
Normal
-1.0
111
Normal
-1.0
113
Tumor
-1.1
127
Tumor
-1.7
125
Tumor
-1.8
128
Normal
-1.9
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
