We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BOLA2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
140.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1942.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1126.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
507.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
476.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
472.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
457.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
451.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
442.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
432.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
430.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
403.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
396.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
393.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
389.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
370.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
368.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
344.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
334.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
326.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
325.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
324.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
319.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
316.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
315.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
312.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
311.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
311.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
306.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
303.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
301.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
296.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
291.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
289.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
289.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
285.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
282.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
280.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
276.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
276.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
274.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
263.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
262.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
262.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
260.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
257.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
257.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
256.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
254.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
249.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
249.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
247.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
247.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
239.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
228.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
228.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
226.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
226.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
225.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
222.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
222.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
220.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
217.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
215.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
215.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
209.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
208.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
206.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
206.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
206.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
203.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
203.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
202.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
202.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
201.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
201.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
199.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
198.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
198.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
197.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
193.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
192.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
189.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
189.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
184.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
181.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
179.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
178.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
174.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
173.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
172.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
172.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
168.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
168.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
167.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
167.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
166.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
165.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
163.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
163.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
161.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
158.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
158.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
158.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
156.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
155.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
155.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
155.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
154.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
154.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
154.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
153.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
152.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
150.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
150.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
149.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
148.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
148.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
146.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
146.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
144.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
143.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
141.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
140.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
140.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
140.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
139.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
139.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
139.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
138.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
137.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
136.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
136.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
135.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
135.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
134.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
134.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
134.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
131.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
131.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
131.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
130.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
129.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
129.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
128.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
128.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
128.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
128.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
127.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
127.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
125.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
124.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
122.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
122.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
121.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
121.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
121.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
118.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
118.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
117.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
116.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
114.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
110.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
109.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
108.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
107.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
107.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
106.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
106.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
106.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
105.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
104.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
104.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
104.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
104.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
104.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
103.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
103.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
102.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
102.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
101.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
99.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
99.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
99.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
98.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
98.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
98.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
98.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
98.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
98.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
98.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
97.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
97.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
96.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
96.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
95.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
95.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
95.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
94.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
93.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
93.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
92.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
92.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
91.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
90.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
90.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
89.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
89.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
89.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
88.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
88.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
87.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
87.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
87.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
86.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
86.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
85.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
85.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
85.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
84.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
83.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
83.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
82.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
82.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
81.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
81.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
81.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
79.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
79.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
79.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
79.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
78.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
78.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
78.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
77.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
77.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
76.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
75.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
75.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
75.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
73.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
73.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
73.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
73.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
72.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
72.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
71.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
71.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
71.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
70.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
70.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
70.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
70.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
69.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
68.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
67.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
67.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
67.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
67.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
66.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
66.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
66.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
64.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
64.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
64.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
64.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
64.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
64.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
63.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
63.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
63.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
63.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
63.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
63.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
62.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
62.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
61.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
61.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
61.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
60.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
60.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
60.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
59.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
57.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
57.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
57.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
54.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
54.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
53.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
51.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
48.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
47.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
47.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
46.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
46.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
44.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
44.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
43.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
42.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
40.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
40.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
38.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
231
Samples
Sample
Description
TPM
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
