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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAMAC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
54.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
53.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
52.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
43.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
40.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
1.7
1021
Tumor
1.4
517
Tumor
1.4
473
Tumor
1.4
965
Tumor
1.3
123
Tumor
1.3
983
Tumor
1.2
533
Tumor
1.2
777
Tumor
1.1
865
Tumor
1.1
211
Tumor
1.1
921
Tumor
1.1
1013
Tumor
1.1
863
Tumor
1.1
877
Tumor
1.1
527
Tumor
1.0
285
Tumor
1.0
497
Tumor
1.0
525
Tumor
1.0
567
Tumor
1.0
535
Tumor
1.0
355
Tumor
0.9
743
Tumor
0.9
817
Tumor
0.9
1025
Tumor
0.9
135
Tumor
0.9
131
Tumor
0.9
697
Tumor
0.9
447
Tumor
0.8
923
Tumor
0.8
967
Tumor
0.8
917
Tumor
0.8
745
Tumor
0.8
415
Tumor
0.8
815
Tumor
0.8
1041
Tumor
0.8
883
Tumor
0.8
425
Tumor
0.8
573
Tumor
0.8
957
Tumor
0.8
487
Tumor
0.8
553
Tumor
0.8
881
Tumor
0.7
523
Tumor
0.7
283
Tumor
0.7
1031
Tumor
0.7
297
Tumor
0.7
937
Tumor
0.7
383
Tumor
0.7
975
Tumor
0.7
785
Tumor
0.7
851
Tumor
0.7
911
Tumor
0.7
483
Tumor
0.6
431
Tumor
0.6
951
Tumor
0.6
477
Tumor
0.6
363
Tumor
0.6
755
Tumor
0.6
695
Tumor
0.6
925
Tumor
0.6
635
Tumor
0.6
351
Tumor
0.6
385
Tumor
0.6
977
Tumor
0.6
913
Tumor
0.6
125
Tumor
0.6
171
Tumor
0.5
395
Tumor
0.5
327
Tumor
0.5
737
Tumor
0.5
172
Normal
0.5
647
Tumor
0.5
915
Tumor
0.5
1045
Tumor
0.5
221
Tumor
0.5
147
Tumor
0.5
375
Tumor
0.5
861
Tumor
0.5
741
Tumor
0.5
478
Normal
0.5
981
Tumor
0.4
427
Tumor
0.4
145
Tumor
0.4
331
Tumor
0.4
665
Tumor
0.4
311
Tumor
0.4
411
Tumor
0.4
455
Tumor
0.4
867
Tumor
0.4
1043
Tumor
0.4
471
Tumor
0.4
493
Tumor
0.4
943
Tumor
0.4
557
Tumor
0.4
491
Tumor
0.4
492
Normal
0.4
537
Tumor
0.3
857
Tumor
0.3
391
Tumor
0.3
341
Tumor
0.3
451
Tumor
0.3
873
Tumor
0.3
953
Tumor
0.3
1042
Normal
0.3
1015
Tumor
0.3
823
Tumor
0.3
866
Normal
0.3
387
Tumor
0.3
223
Tumor
0.3
482
Normal
0.3
412
Normal
0.3
661
Tumor
0.3
874
Normal
0.3
663
Tumor
0.3
461
Tumor
0.3
963
Tumor
0.3
641
Tumor
0.3
413
Tumor
0.3
481
Tumor
0.3
864
Normal
0.2
715
Tumor
0.2
498
Normal
0.2
563
Tumor
0.2
571
Tumor
0.2
813
Tumor
0.2
137
Tumor
0.2
944
Normal
0.2
467
Tumor
0.2
435
Tumor
0.2
227
Tumor
0.2
141
Tumor
0.2
361
Tumor
0.2
868
Normal
0.2
267
Tumor
0.2
627
Tumor
0.2
727
Tumor
0.2
628
Normal
0.2
112
Tumor
0.2
284
Normal
0.2
862
Normal
0.2
648
Normal
0.2
814
Normal
0.2
938
Normal
0.2
954
Normal
0.2
328
Normal
0.2
463
Tumor
0.1
664
Normal
0.1
357
Tumor
0.1
672
Normal
0.1
912
Normal
0.1
524
Normal
0.1
956
Normal
0.1
824
Normal
0.1
671
Tumor
0.1
513
Tumor
0.1
617
Tumor
0.1
916
Normal
0.1
416
Normal
0.1
538
Normal
0.1
162
Normal
0.1
515
Tumor
0.1
924
Normal
0.1
955
Tumor
0.1
161
Tumor
0.1
615
Tumor
0.1
1022
Normal
0.1
421
Tumor
0.1
212
Normal
0.1
127
Tumor
0.1
666
Normal
0.1
353
Tumor
0.1
685
Tumor
0.1
952
Normal
0.1
858
Normal
0.1
518
Normal
0.1
714
Normal
0.1
536
Normal
0.1
1028
Normal
0.1
472
Normal
0.1
484
Normal
0.1
878
Normal
0.1
462
Normal
0.1
852
Normal
0.1
884
Normal
0.1
313
Tumor
0.1
744
Normal
0.1
271
Tumor
0.1
113
Tumor
0.1
914
Normal
0.0
926
Normal
0.0
148
Normal
0.0
185
Tumor
0.0
1026
Normal
0.0
393
Tumor
0.0
516
Normal
0.0
636
Normal
0.0
564
Normal
0.0
572
Normal
0.0
546
Normal
0.0
616
Normal
0.0
618
Normal
0.0
1032
Normal
0.0
188
Normal
0.0
723
Tumor
0.0
662
Normal
0.0
722
Normal
0.0
756
Normal
0.0
786
Normal
0.0
742
Normal
0.0
224
Normal
0.0
195
Tumor
0.0
228
Normal
0.0
186
Normal
0.0
816
Normal
0.0
968
Normal
0.0
958
Normal
0.0
433
Tumor
0.0
554
Normal
0.0
818
Normal
0.0
364
Normal
0.0
642
Normal
0.0
286
Normal
0.0
918
Normal
0.0
365
Tumor
0.0
367
Tumor
0.0
191
Tumor
-0.1
187
Tumor
-0.1
922
Normal
-0.1
217
Tumor
-0.1
231
Tumor
-0.1
978
Normal
-0.1
277
Tumor
-0.1
724
Normal
-0.1
984
Normal
-0.1
716
Normal
-0.1
443
Tumor
-0.1
494
Normal
-0.1
696
Normal
-0.1
526
Normal
-0.1
728
Normal
-0.1
488
Normal
-0.1
982
Normal
-0.1
474
Normal
-0.1
558
Normal
-0.1
778
Normal
-0.1
232
Normal
-0.1
882
Normal
-0.1
534
Normal
-0.1
1046
Normal
-0.1
146
Normal
-0.1
568
Normal
-0.1
262
Normal
-0.1
698
Normal
-0.1
138
Normal
-0.2
384
Normal
-0.2
738
Normal
-0.2
964
Normal
-0.2
1044
Normal
-0.2
746
Normal
-0.2
721
Tumor
-0.2
966
Normal
-0.2
1014
Normal
-0.2
298
Normal
-0.2
528
Normal
-0.2
356
Normal
-0.2
257
Tumor
-0.2
261
Tumor
-0.2
514
Normal
-0.2
465
Tumor
-0.2
686
Normal
-0.2
192
Normal
-0.2
1016
Normal
-0.2
312
Normal
-0.2
222
Normal
-0.3
976
Normal
-0.3
213
Tumor
-0.3
448
Normal
-0.3
272
Normal
-0.3
424
Normal
-0.3
574
Normal
-0.3
396
Normal
-0.3
142
Normal
-0.3
466
Normal
-0.3
268
Normal
-0.3
258
Normal
-0.3
713
Tumor
-0.3
428
Normal
-0.3
132
Normal
-0.3
456
Normal
-0.3
136
Normal
-0.4
468
Normal
-0.4
414
Normal
-0.4
214
Normal
-0.4
362
Normal
-0.4
388
Normal
-0.4
278
Normal
-0.4
368
Normal
-0.4
366
Normal
-0.4
423
Tumor
-0.4
342
Normal
-0.4
376
Normal
-0.4
354
Normal
-0.4
114
Normal
-0.5
314
Normal
-0.5
343
Tumor
-0.5
452
Normal
-0.5
394
Normal
-0.5
196
Normal
-0.5
1027
Tumor
-0.5
392
Normal
-0.5
386
Normal
-0.5
422
Normal
-0.5
126
Normal
-0.5
464
Normal
-0.5
426
Normal
-0.5
358
Normal
-0.5
445
Tumor
-0.6
218
Normal
-0.6
444
Normal
-0.6
332
Normal
-0.6
434
Normal
-0.6
352
Normal
-0.6
124
Normal
-0.6
128
Normal
-0.7
344
Normal
-0.7
111
Normal
-0.7
436
Normal
-1.0
446
Normal
-1.0
432
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
