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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C15orf40 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C15orf40 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
1.1
1041
Tumor
1.1
257
Tumor
1.0
411
Tumor
1.0
925
Tumor
1.0
741
Tumor
0.9
1027
Tumor
0.9
473
Tumor
0.9
953
Tumor
0.8
517
Tumor
0.8
1031
Tumor
0.8
951
Tumor
0.8
571
Tumor
0.7
425
Tumor
0.7
513
Tumor
0.7
745
Tumor
0.7
957
Tumor
0.7
715
Tumor
0.7
471
Tumor
0.7
727
Tumor
0.6
1013
Tumor
0.6
915
Tumor
0.6
743
Tumor
0.6
533
Tumor
0.6
227
Tumor
0.5
937
Tumor
0.5
1015
Tumor
0.5
261
Tumor
0.5
983
Tumor
0.5
357
Tumor
0.5
926
Normal
0.5
627
Tumor
0.5
1021
Tumor
0.4
965
Tumor
0.4
981
Tumor
0.4
131
Tumor
0.4
977
Tumor
0.4
698
Normal
0.4
984
Normal
0.4
867
Tumor
0.4
728
Normal
0.4
355
Tumor
0.4
535
Tumor
0.3
431
Tumor
0.3
883
Tumor
0.3
963
Tumor
0.3
823
Tumor
0.3
443
Tumor
0.3
785
Tumor
0.3
483
Tumor
0.3
862
Normal
0.3
127
Tumor
0.3
861
Tumor
0.3
968
Normal
0.3
737
Tumor
0.3
1014
Normal
0.3
534
Normal
0.3
462
Normal
0.3
742
Normal
0.3
313
Tumor
0.2
1043
Tumor
0.2
546
Normal
0.2
472
Normal
0.2
537
Tumor
0.2
465
Tumor
0.2
433
Tumor
0.2
412
Normal
0.2
572
Normal
0.2
756
Normal
0.2
815
Tumor
0.2
738
Normal
0.2
944
Normal
0.2
978
Normal
0.2
641
Tumor
0.2
573
Tumor
0.2
1025
Tumor
0.2
851
Tumor
0.2
958
Normal
0.2
918
Normal
0.2
1016
Normal
0.2
912
Normal
0.2
447
Tumor
0.2
964
Normal
0.2
873
Tumor
0.2
478
Normal
0.2
461
Tumor
0.2
466
Normal
0.2
516
Normal
0.2
982
Normal
0.1
362
Normal
0.1
818
Normal
0.1
695
Tumor
0.1
1042
Normal
0.1
553
Tumor
0.1
852
Normal
0.1
924
Normal
0.1
387
Tumor
0.1
938
Normal
0.1
415
Tumor
0.1
298
Normal
0.1
488
Normal
0.1
954
Normal
0.1
786
Normal
0.1
877
Tumor
0.1
975
Tumor
0.1
824
Normal
0.1
514
Normal
0.1
341
Tumor
0.1
923
Tumor
0.1
1026
Normal
0.1
385
Tumor
0.1
137
Tumor
0.1
865
Tumor
0.1
955
Tumor
0.1
878
Normal
0.1
916
Normal
0.1
858
Normal
0.1
911
Tumor
0.1
445
Tumor
0.1
723
Tumor
0.1
874
Normal
0.1
618
Normal
0.1
361
Tumor
0.1
497
Tumor
0.1
493
Tumor
0.1
363
Tumor
0.0
746
Normal
0.0
421
Tumor
0.0
1032
Normal
0.0
868
Normal
0.0
224
Normal
0.0
866
Normal
0.0
922
Normal
0.0
327
Tumor
0.0
615
Tumor
0.0
351
Tumor
0.0
482
Normal
0.0
563
Tumor
0.0
498
Normal
0.0
1044
Normal
0.0
515
Tumor
0.0
755
Tumor
0.0
481
Tumor
0.0
914
Normal
0.0
536
Normal
0.0
455
Tumor
0.0
1022
Normal
0.0
554
Normal
0.0
364
Normal
0.0
474
Normal
0.0
413
Tumor
0.0
714
Normal
0.0
857
Tumor
0.0
884
Normal
0.0
882
Normal
0.0
524
Normal
0.0
697
Tumor
0.0
863
Tumor
0.0
816
Normal
0.0
185
Tumor
0.0
367
Tumor
0.0
567
Tumor
0.0
328
Normal
0.0
356
Normal
0.0
952
Normal
0.0
716
Normal
0.0
366
Normal
0.0
375
Tumor
-0.1
448
Normal
-0.1
956
Normal
-0.1
332
Normal
-0.1
484
Normal
-0.1
557
Tumor
-0.1
467
Tumor
-0.1
142
Normal
-0.1
616
Normal
-0.1
661
Tumor
-0.1
526
Normal
-0.1
314
Normal
-0.1
724
Normal
-0.1
384
Normal
-0.1
617
Tumor
-0.1
568
Normal
-0.1
211
Tumor
-0.1
666
Normal
-0.1
662
Normal
-0.1
966
Normal
-0.1
744
Normal
-0.1
1045
Tumor
-0.1
864
Normal
-0.1
636
Normal
-0.1
538
Normal
-0.1
558
Normal
-0.1
635
Tumor
-0.1
312
Normal
-0.1
817
Tumor
-0.1
778
Normal
-0.1
423
Tumor
-0.1
665
Tumor
-0.1
628
Normal
-0.1
416
Normal
-0.1
271
Tumor
-0.1
967
Tumor
-0.1
494
Normal
-0.1
976
Normal
-0.1
664
Normal
-0.1
135
Tumor
-0.1
376
Normal
-0.1
564
Normal
-0.1
284
Normal
-0.1
696
Normal
-0.1
171
Tumor
-0.1
881
Tumor
-0.1
228
Normal
-0.1
518
Normal
-0.1
112
Tumor
-0.1
352
Normal
-0.1
196
Normal
-0.2
663
Tumor
-0.2
686
Normal
-0.2
943
Tumor
-0.2
528
Normal
-0.2
435
Tumor
-0.2
278
Normal
-0.2
525
Tumor
-0.2
365
Tumor
-0.2
545
Tumor
-0.2
358
Normal
-0.2
1046
Normal
-0.2
647
Tumor
-0.2
777
Tumor
-0.2
414
Normal
-0.2
311
Tumor
-0.2
285
Tumor
-0.2
468
Normal
-0.2
426
Normal
-0.2
487
Tumor
-0.2
432
Normal
-0.2
354
Normal
-0.2
212
Normal
-0.2
111
Normal
-0.2
223
Tumor
-0.2
921
Tumor
-0.2
451
Tumor
-0.2
424
Normal
-0.2
141
Tumor
-0.2
492
Normal
-0.2
685
Tumor
-0.2
277
Tumor
-0.2
172
Normal
-0.2
148
Normal
-0.3
283
Tumor
-0.3
113
Tumor
-0.3
427
Tumor
-0.3
672
Normal
-0.3
286
Normal
-0.3
464
Normal
-0.3
1028
Normal
-0.3
213
Tumor
-0.3
671
Tumor
-0.3
913
Tumor
-0.3
126
Normal
-0.3
574
Normal
-0.3
394
Normal
-0.3
428
Normal
-0.3
258
Normal
-0.3
444
Normal
-0.3
386
Normal
-0.3
186
Normal
-0.3
436
Normal
-0.3
648
Normal
-0.3
446
Normal
-0.4
814
Normal
-0.4
713
Tumor
-0.4
383
Tumor
-0.4
391
Tumor
-0.4
162
Normal
-0.4
231
Tumor
-0.4
642
Normal
-0.4
523
Tumor
-0.4
262
Normal
-0.4
192
Normal
-0.4
342
Normal
-0.4
368
Normal
-0.4
147
Tumor
-0.4
917
Tumor
-0.4
267
Tumor
-0.4
331
Tumor
-0.4
527
Tumor
-0.4
191
Tumor
-0.4
722
Normal
-0.4
146
Normal
-0.4
388
Normal
-0.4
422
Normal
-0.4
452
Normal
-0.4
195
Tumor
-0.4
434
Normal
-0.4
188
Normal
-0.4
297
Tumor
-0.4
392
Normal
-0.4
232
Normal
-0.4
128
Normal
-0.4
187
Tumor
-0.4
214
Normal
-0.4
272
Normal
-0.5
721
Tumor
-0.5
456
Normal
-0.5
221
Tumor
-0.5
268
Normal
-0.5
161
Tumor
-0.5
132
Normal
-0.5
124
Normal
-0.5
222
Normal
-0.5
218
Normal
-0.5
353
Tumor
-0.5
344
Normal
-0.6
396
Normal
-0.6
136
Normal
-0.6
114
Normal
-0.6
343
Tumor
-0.6
393
Tumor
-0.6
138
Normal
-0.6
217
Tumor
-0.6
491
Tumor
-0.6
813
Tumor
-0.7
395
Tumor
-0.7
145
Tumor
-0.9
125
Tumor
-0.9
123
Tumor
-0.9
463
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
