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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HINT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
373.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
952.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
948.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
870.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
860.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
835.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
785.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
777.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
775.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
690.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
686.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
675.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
661.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
661.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
658.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
646.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
642.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
641.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
629.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
623.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
621.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
620.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
616.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
604.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
601.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
599.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
597.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
593.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
590.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
587.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
587.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
584.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
570.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
558.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
549.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
548.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
542.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
540.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
540.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
535.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
532.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
532.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
524.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
523.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
519.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
510.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
509.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
507.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
506.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
504.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
502.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
502.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
500.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
498.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
494.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
494.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
491.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
491.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
489.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
488.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
487.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
486.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
485.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
483.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
482.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
482.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
481.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
479.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
474.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
473.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
473.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
472.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
472.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
471.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
470.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
469.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
469.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
466.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
466.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
464.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
462.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
459.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
459.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
458.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
457.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
454.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
452.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
451.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
451.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
450.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
449.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
447.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
447.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
444.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
443.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
437.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
437.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
435.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
434.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
434.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
434.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
431.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
431.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
431.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
427.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
426.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
426.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
425.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
424.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
423.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
423.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
422.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
420.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
418.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
417.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
417.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
416.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
414.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
413.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
412.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
412.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
412.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
412.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
412.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
411.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
410.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
410.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
410.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
408.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
408.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
407.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
405.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
405.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
405.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
405.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
404.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
404.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
402.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
402.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
399.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
399.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
399.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
399.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
398.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
398.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
397.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
397.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
397.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
397.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
395.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
393.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
389.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
385.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
384.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
383.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
382.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
381.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
381.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
381.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
380.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
378.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
376.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
374.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
373.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
373.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
372.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
372.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
370.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
369.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
367.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
366.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
366.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
365.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
362.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
361.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
360.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
360.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
359.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
356.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
355.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
353.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
353.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
352.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
351.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
350.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
349.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
348.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
348.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
347.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
346.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
345.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
345.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
345.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
344.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
344.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
343.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
341.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
338.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
338.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
336.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
335.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
335.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
335.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
334.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
334.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
333.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
332.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
331.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
330.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
330.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
330.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
328.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
327.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
327.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
326.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
326.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
324.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
322.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
322.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
320.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
317.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
317.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
315.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
315.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
312.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
312.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
312.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
312.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
311.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
310.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
308.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
308.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
307.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
307.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
307.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
305.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
305.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
304.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
303.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
303.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
303.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
302.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
301.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
300.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
300.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
299.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
298.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
298.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
297.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
296.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
295.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
292.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
289.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
288.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
286.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
286.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
285.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
284.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
284.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
283.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
281.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
280.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
280.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
279.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
278.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
277.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
277.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
275.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
273.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
272.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
272.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
270.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
270.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
270.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
269.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
269.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
268.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
267.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
267.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
265.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
265.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
264.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
264.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
262.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
261.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
259.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
258.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
258.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
257.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
255.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
254.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
254.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
254.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
253.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
253.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
251.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
251.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
251.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
250.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
246.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
245.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
245.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
243.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
243.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
241.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
241.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
241.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
240.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
240.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
239.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
238.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
238.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
237.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
234.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
234.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
234.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
232.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
231.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
228.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
227.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
227.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
226.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
226.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
222.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
222.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
222.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
221.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
220.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
215.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
213.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
213.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
213.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
211.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
210.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
209.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
209.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
206.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
205.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
203.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
203.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
202.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
198.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
196.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
193.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
191.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
187.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
181.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
178.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
177.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
174.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
173.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
169.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
169.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
169.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
166.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
165.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
164.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
162.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
161.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
156.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
148.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
140.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HINT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
433.6
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
1173.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
1103.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
1020.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
976.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
957.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
957.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
897.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
868.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
844.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
780.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
774.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
767.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
754.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
752.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
717.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
716.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
714.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
714.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
706.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
706.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
705.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
701.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
670.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
643.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
636.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
631.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
630.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
624.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
620.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
618.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
618.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
613.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
607.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
606.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
604.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
603.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
602.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
595.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
592.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
591.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
591.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
589.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
585.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
582.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
578.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
570.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
568.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
567.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
567.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
563.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
562.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
561.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
554.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
552.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
551.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
546.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
546.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
537.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
537.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
536.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
530.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
530.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
529.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
528.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
526.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
518.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
517.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
515.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
514.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
513.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
510.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
508.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
505.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
504.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
504.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
502.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
499.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
496.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
493.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
492.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
486.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
480.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
479.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
476.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
475.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
471.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
470.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
469.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
468.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
463.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
459.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
457.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
457.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
456.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
455.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
449.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
448.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
447.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
447.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
444.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
442.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
441.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
434.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
423.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
417.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
416.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
412.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
409.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
407.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
406.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
404.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
403.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
403.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
401.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
401.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
400.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
399.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
398.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
398.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
396.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
389.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
388.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
387.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
385.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
384.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
384.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
381.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
380.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
379.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
376.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
374.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
372.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
372.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
369.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
364.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
363.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
361.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
359.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
356.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
354.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
352.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
351.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
350.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
349.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
346.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
346.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
344.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
342.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
341.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
340.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
338.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
337.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
334.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
326.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
322.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
322.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
319.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
318.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
317.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
315.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
315.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
314.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
312.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
311.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
305.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
302.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
302.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
300.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
300.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
297.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
296.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
294.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
294.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
294.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
292.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
292.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
290.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
289.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
288.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
285.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
285.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
283.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
279.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
277.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
277.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
276.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
276.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
273.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
273.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
270.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
268.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
267.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
264.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
261.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
259.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
255.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
255.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
253.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
250.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
250.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
246.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
246.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
245.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
244.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
243.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
241.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
232.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
231.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
230.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
228.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
222.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
221.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
220.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
219.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
214.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
212.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
211.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
208.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
207.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
204.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
204.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
193.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
184.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
166.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
165.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
156.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
144.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
143.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
132.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
123.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
79.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.0
123
Tumor
0.9
635
Tumor
0.9
353
Tumor
0.8
431
Tumor
0.8
571
Tumor
0.7
865
Tumor
0.7
147
Tumor
0.6
777
Tumor
0.6
1027
Tumor
0.6
355
Tumor
0.5
465
Tumor
0.5
161
Tumor
0.5
222
Normal
0.5
523
Tumor
0.5
128
Normal
0.5
636
Normal
0.5
223
Tumor
0.5
617
Tumor
0.5
218
Normal
0.4
745
Tumor
0.4
616
Normal
0.4
261
Tumor
0.4
332
Normal
0.4
663
Tumor
0.4
186
Normal
0.4
277
Tumor
0.4
746
Normal
0.4
695
Tumor
0.4
342
Normal
0.4
114
Normal
0.4
411
Tumor
0.4
196
Normal
0.4
737
Tumor
0.4
376
Normal
0.3
698
Normal
0.3
923
Tumor
0.3
452
Normal
0.3
426
Normal
0.3
127
Tumor
0.3
137
Tumor
0.3
344
Normal
0.3
171
Tumor
0.3
742
Normal
0.3
557
Tumor
0.3
911
Tumor
0.3
878
Normal
0.3
627
Tumor
0.3
778
Normal
0.3
358
Normal
0.3
1043
Tumor
0.3
124
Normal
0.3
1026
Normal
0.3
1022
Normal
0.3
298
Normal
0.3
435
Tumor
0.3
213
Tumor
0.3
618
Normal
0.3
915
Tumor
0.3
481
Tumor
0.3
467
Tumor
0.3
214
Normal
0.3
723
Tumor
0.3
741
Tumor
0.3
231
Tumor
0.2
148
Normal
0.2
314
Normal
0.2
1025
Tumor
0.2
938
Normal
0.2
824
Normal
0.2
924
Normal
0.2
862
Normal
0.2
952
Normal
0.2
1021
Tumor
0.2
738
Normal
0.2
423
Tumor
0.2
877
Tumor
0.2
278
Normal
0.2
111
Normal
0.2
366
Normal
0.2
925
Tumor
0.2
436
Normal
0.2
145
Tumor
0.2
361
Tumor
0.2
392
Normal
0.2
428
Normal
0.2
488
Normal
0.2
112
Tumor
0.2
642
Normal
0.2
272
Normal
0.2
957
Tumor
0.2
394
Normal
0.2
615
Tumor
0.2
482
Normal
0.2
257
Tumor
0.2
456
Normal
0.2
861
Tumor
0.2
628
Normal
0.2
354
Normal
0.2
132
Normal
0.2
312
Normal
0.2
527
Tumor
0.2
448
Normal
0.2
136
Normal
0.2
258
Normal
0.2
414
Normal
0.2
813
Tumor
0.2
313
Tumor
0.2
162
Normal
0.2
146
Normal
0.2
383
Tumor
0.2
744
Normal
0.1
388
Normal
0.1
984
Normal
0.1
422
Normal
0.1
647
Tumor
0.1
341
Tumor
0.1
714
Normal
0.1
1041
Tumor
0.1
568
Normal
0.1
567
Tumor
0.1
267
Tumor
0.1
867
Tumor
0.1
443
Tumor
0.1
858
Normal
0.1
558
Normal
0.1
464
Normal
0.1
468
Normal
0.1
466
Normal
0.1
364
Normal
0.1
756
Normal
0.1
328
Normal
0.1
477
Tumor
0.1
977
Tumor
0.1
664
Normal
0.1
716
Normal
0.1
232
Normal
0.1
262
Normal
0.1
1028
Normal
0.1
191
Tumor
0.1
424
Normal
0.1
546
Normal
0.1
1016
Normal
0.1
882
Normal
0.1
131
Tumor
0.1
818
Normal
0.1
217
Tumor
0.1
142
Normal
0.1
375
Tumor
0.1
172
Normal
0.1
572
Normal
0.1
1032
Normal
0.1
1014
Normal
0.1
786
Normal
0.1
648
Normal
0.1
135
Tumor
0.1
484
Normal
0.1
387
Tumor
0.1
221
Tumor
0.1
126
Normal
0.1
286
Normal
0.1
955
Tumor
0.1
188
Normal
0.1
425
Tumor
0.1
724
Normal
0.1
954
Normal
0.1
686
Normal
0.1
462
Normal
0.1
368
Normal
0.1
268
Normal
0.1
982
Normal
0.1
696
Normal
0.1
185
Tumor
0.1
944
Normal
0.1
228
Normal
0.1
722
Normal
0.1
497
Tumor
0.1
365
Tumor
0.1
396
Normal
0.0
195
Tumor
0.0
472
Normal
0.0
138
Normal
0.0
357
Tumor
0.0
433
Tumor
0.0
953
Tumor
0.0
1046
Normal
0.0
873
Tumor
0.0
113
Tumor
0.0
715
Tumor
0.0
421
Tumor
0.0
352
Normal
0.0
966
Normal
0.0
981
Tumor
0.0
641
Tumor
0.0
816
Normal
0.0
187
Tumor
0.0
538
Normal
0.0
823
Tumor
0.0
515
Tumor
0.0
864
Normal
0.0
852
Normal
0.0
455
Tumor
0.0
386
Normal
0.0
395
Tumor
0.0
356
Normal
0.0
362
Normal
0.0
728
Normal
0.0
416
Normal
0.0
755
Tumor
0.0
483
Tumor
0.0
534
Normal
0.0
866
Normal
0.0
528
Normal
0.0
964
Normal
0.0
432
Normal
0.0
327
Tumor
0.0
785
Tumor
0.0
498
Normal
0.0
284
Normal
0.0
518
Normal
0.0
473
Tumor
0.0
976
Normal
0.0
912
Normal
0.0
662
Normal
0.0
685
Tumor
0.0
412
Normal
0.0
1031
Tumor
0.0
958
Normal
0.0
1044
Normal
-0.1
956
Normal
-0.1
554
Normal
-0.1
517
Tumor
-0.1
474
Normal
-0.1
513
Tumor
-0.1
553
Tumor
-0.1
874
Normal
-0.1
573
Tumor
-0.1
922
Normal
-0.1
212
Normal
-0.1
968
Normal
-0.1
857
Tumor
-0.1
913
Tumor
-0.1
926
Normal
-0.1
125
Tumor
-0.1
1042
Normal
-0.1
564
Normal
-0.1
494
Normal
-0.1
192
Normal
-0.1
285
Tumor
-0.1
868
Normal
-0.1
478
Normal
-0.1
533
Tumor
-0.1
384
Normal
-0.1
666
Normal
-0.1
963
Tumor
-0.1
451
Tumor
-0.1
978
Normal
-0.1
444
Normal
-0.1
916
Normal
-0.1
141
Tumor
-0.1
921
Tumor
-0.1
393
Tumor
-0.1
884
Normal
-0.1
516
Normal
-0.1
574
Normal
-0.1
427
Tumor
-0.1
914
Normal
-0.2
918
Normal
-0.2
965
Tumor
-0.2
271
Tumor
-0.2
883
Tumor
-0.2
491
Tumor
-0.2
224
Normal
-0.2
446
Normal
-0.2
526
Normal
-0.2
851
Tumor
-0.2
665
Tumor
-0.2
434
Normal
-0.2
493
Tumor
-0.2
937
Tumor
-0.2
471
Tumor
-0.2
297
Tumor
-0.2
331
Tumor
-0.2
536
Normal
-0.3
363
Tumor
-0.3
563
Tumor
-0.3
463
Tumor
-0.3
815
Tumor
-0.3
311
Tumor
-0.3
227
Tumor
-0.3
514
Normal
-0.3
461
Tumor
-0.3
524
Normal
-0.3
743
Tumor
-0.3
447
Tumor
-0.3
413
Tumor
-0.3
1045
Tumor
-0.3
492
Normal
-0.3
881
Tumor
-0.3
545
Tumor
-0.4
672
Normal
-0.4
863
Tumor
-0.4
983
Tumor
-0.4
727
Tumor
-0.4
537
Tumor
-0.4
445
Tumor
-0.4
391
Tumor
-0.4
525
Tumor
-0.4
814
Normal
-0.4
367
Tumor
-0.4
975
Tumor
-0.4
351
Tumor
-0.4
697
Tumor
-0.4
415
Tumor
-0.5
487
Tumor
-0.5
967
Tumor
-0.5
713
Tumor
-0.5
721
Tumor
-0.6
1015
Tumor
-0.6
817
Tumor
-0.7
951
Tumor
-0.7
943
Tumor
-0.7
917
Tumor
-0.7
385
Tumor
-0.8
211
Tumor
-0.8
283
Tumor
-0.9
671
Tumor
-1.0
343
Tumor
-1.0
535
Tumor
-1.0
661
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.