We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZEB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZEB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.8
877
Tumor
1.5
192
Normal
1.3
558
Normal
1.2
354
Normal
1.1
1041
Tumor
1.0
563
Tumor
1.0
478
Normal
1.0
785
Tumor
1.0
258
Normal
1.0
425
Tumor
0.9
146
Normal
0.9
283
Tumor
0.9
958
Normal
0.8
224
Normal
0.8
572
Normal
0.8
428
Normal
0.8
498
Normal
0.8
573
Tumor
0.7
421
Tumor
0.7
444
Normal
0.7
713
Tumor
0.7
492
Normal
0.7
568
Normal
0.7
517
Tumor
0.7
1042
Normal
0.7
391
Tumor
0.7
211
Tumor
0.6
1032
Normal
0.6
384
Normal
0.6
964
Normal
0.6
716
Normal
0.6
1022
Normal
0.6
564
Normal
0.6
396
Normal
0.6
268
Normal
0.6
284
Normal
0.6
424
Normal
0.6
341
Tumor
0.6
722
Normal
0.6
388
Normal
0.6
344
Normal
0.5
141
Tumor
0.5
721
Tumor
0.5
1028
Normal
0.5
852
Normal
0.5
394
Normal
0.5
145
Tumor
0.5
863
Tumor
0.5
672
Normal
0.5
383
Tumor
0.5
126
Normal
0.5
491
Tumor
0.5
212
Normal
0.5
395
Tumor
0.5
195
Tumor
0.5
571
Tumor
0.5
816
Normal
0.5
686
Normal
0.5
426
Normal
0.5
744
Normal
0.5
536
Normal
0.5
188
Normal
0.5
472
Normal
0.5
884
Normal
0.5
723
Tumor
0.4
386
Normal
0.4
131
Tumor
0.4
272
Normal
0.4
232
Normal
0.4
392
Normal
0.4
414
Normal
0.4
815
Tumor
0.4
364
Normal
0.4
976
Normal
0.4
314
Normal
0.4
968
Normal
0.4
461
Tumor
0.4
818
Normal
0.4
368
Normal
0.4
362
Normal
0.4
213
Tumor
0.4
262
Normal
0.4
966
Normal
0.4
311
Tumor
0.4
191
Tumor
0.4
142
Normal
0.4
393
Tumor
0.4
332
Normal
0.4
474
Normal
0.4
924
Normal
0.4
857
Tumor
0.4
738
Normal
0.4
352
Normal
0.4
868
Normal
0.4
228
Normal
0.4
862
Normal
0.4
366
Normal
0.4
786
Normal
0.4
953
Tumor
0.4
353
Tumor
0.3
468
Normal
0.3
464
Normal
0.3
756
Normal
0.3
466
Normal
0.3
218
Normal
0.3
878
Normal
0.3
742
Normal
0.3
132
Normal
0.3
222
Normal
0.3
912
Normal
0.3
376
Normal
0.3
434
Normal
0.3
365
Tumor
0.3
696
Normal
0.3
214
Normal
0.3
1046
Normal
0.3
1044
Normal
0.3
916
Normal
0.3
494
Normal
0.3
387
Tumor
0.3
814
Normal
0.3
1045
Tumor
0.3
741
Tumor
0.3
185
Tumor
0.3
975
Tumor
0.3
135
Tumor
0.3
823
Tumor
0.3
286
Normal
0.3
963
Tumor
0.3
358
Normal
0.2
297
Tumor
0.2
433
Tumor
0.2
851
Tumor
0.2
813
Tumor
0.2
574
Normal
0.2
817
Tumor
0.2
918
Normal
0.2
922
Normal
0.2
917
Tumor
0.2
728
Normal
0.2
697
Tumor
0.2
516
Normal
0.2
342
Normal
0.2
456
Normal
0.2
778
Normal
0.2
662
Normal
0.2
217
Tumor
0.2
312
Normal
0.2
746
Normal
0.2
535
Tumor
0.2
724
Normal
0.2
926
Normal
0.2
482
Normal
0.2
664
Normal
0.2
983
Tumor
0.2
666
Normal
0.2
422
Normal
0.2
864
Normal
0.2
881
Tumor
0.2
223
Tumor
0.2
187
Tumor
0.2
186
Normal
0.2
448
Normal
0.1
148
Normal
0.1
858
Normal
0.1
114
Normal
0.1
298
Normal
0.1
467
Tumor
0.1
385
Tumor
0.1
824
Normal
0.1
981
Tumor
0.1
432
Normal
0.1
488
Normal
0.1
375
Tumor
0.1
866
Normal
0.1
138
Normal
0.1
416
Normal
0.1
446
Normal
0.1
951
Tumor
0.1
648
Normal
0.1
278
Normal
0.1
914
Normal
0.1
661
Tumor
0.1
328
Normal
0.1
367
Tumor
0.1
124
Normal
0.1
447
Tumor
0.1
484
Normal
0.1
462
Normal
0.1
361
Tumor
0.1
514
Normal
0.1
196
Normal
0.1
125
Tumor
0.1
331
Tumor
0.1
231
Tumor
0.1
567
Tumor
0.1
882
Normal
0.1
171
Tumor
0.1
714
Normal
0.0
136
Normal
0.0
271
Tumor
0.0
111
Normal
0.0
137
Tumor
0.0
685
Tumor
0.0
483
Tumor
0.0
956
Normal
0.0
513
Tumor
0.0
874
Normal
0.0
743
Tumor
0.0
952
Normal
0.0
355
Tumor
0.0
727
Tumor
0.0
523
Tumor
0.0
455
Tumor
0.0
356
Normal
0.0
363
Tumor
0.0
351
Tumor
0.0
431
Tumor
0.0
698
Normal
0.0
1027
Tumor
0.0
172
Normal
0.0
628
Normal
0.0
327
Tumor
0.0
452
Normal
0.0
427
Tumor
0.0
671
Tumor
0.0
642
Normal
0.0
1025
Tumor
0.0
267
Tumor
-0.1
943
Tumor
-0.1
715
Tumor
-0.1
515
Tumor
-0.1
977
Tumor
-0.1
162
Normal
-0.1
493
Tumor
-0.1
261
Tumor
-0.1
147
Tumor
-0.1
412
Normal
-0.1
737
Tumor
-0.1
471
Tumor
-0.1
618
Normal
-0.1
525
Tumor
-0.1
221
Tumor
-0.1
415
Tumor
-0.1
616
Normal
-0.1
695
Tumor
-0.1
921
Tumor
-0.1
128
Normal
-0.1
938
Normal
-0.1
636
Normal
-0.1
861
Tumor
-0.1
161
Tumor
-0.2
465
Tumor
-0.2
965
Tumor
-0.2
413
Tumor
-0.2
1026
Normal
-0.2
257
Tumor
-0.2
982
Normal
-0.2
883
Tumor
-0.2
524
Normal
-0.2
112
Tumor
-0.2
617
Tumor
-0.2
123
Tumor
-0.2
923
Tumor
-0.2
967
Tumor
-0.2
777
Tumor
-0.2
435
Tumor
-0.2
1031
Tumor
-0.2
481
Tumor
-0.2
641
Tumor
-0.2
925
Tumor
-0.2
113
Tumor
-0.3
463
Tumor
-0.3
665
Tumor
-0.3
313
Tumor
-0.3
1015
Tumor
-0.3
277
Tumor
-0.3
944
Normal
-0.3
913
Tumor
-0.3
984
Normal
-0.3
518
Normal
-0.3
227
Tumor
-0.3
1043
Tumor
-0.3
867
Tumor
-0.4
497
Tumor
-0.4
443
Tumor
-0.4
627
Tumor
-0.4
477
Tumor
-0.4
451
Tumor
-0.4
647
Tumor
-0.4
957
Tumor
-0.4
955
Tumor
-0.4
423
Tumor
-0.4
954
Normal
-0.4
915
Tumor
-0.4
445
Tumor
-0.4
526
Normal
-0.4
873
Tumor
-0.4
127
Tumor
-0.4
663
Tumor
-0.5
937
Tumor
-0.5
436
Normal
-0.5
911
Tumor
-0.5
1014
Normal
-0.5
755
Tumor
-0.5
473
Tumor
-0.5
1021
Tumor
-0.6
745
Tumor
-0.6
865
Tumor
-0.6
615
Tumor
-0.6
411
Tumor
-0.6
357
Tumor
-0.7
1016
Normal
-0.7
285
Tumor
-0.7
557
Tumor
-0.7
487
Tumor
-0.8
1013
Tumor
-0.8
978
Normal
-0.9
635
Tumor
-1.7
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
