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General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Assigned HPA protein class(es) for the encoded protein(s).
Cancer-related genes Disease related genes Human disease related genes Metabolic proteins Plasma proteins
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
15
Cytoband
q24.2
Chromosome location (bp)
75369379 - 75455842
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
Useful information about the protein provided by UniProt.
Acts as a transcriptional repressor. Corepressor for REST. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Also interacts with MXD1-MAX heterodimers to repress transcription by tethering SIN3A to DNA. Acts cooperatively with OGT to repress transcription in parallel with histone deacetylation. Involved in the control of the circadian rhythms. Required for the transcriptional repression of circadian target genes, such as PER1, mediated by the large PER complex through histone deacetylation. Cooperates with FOXK1 to regulate cell cycle progression probably by repressing cell cycle inhibitor genes expression (By similarity). Required for cortical neuron differentiation and callosal axon elongation (By similarity)....show less
Molecular function (UniProt)i
Keywords assigned by UniProt to proteins due to their particular molecular function.
Repressor
Biological process (UniProt)i
Keywords assigned by UniProt to proteins because they are involved in a particular biological process.
The protein encoded by this gene is a transcriptional regulatory protein. It contains paired amphipathic helix (PAH) domains, which are important for protein-protein interactions and may mediate repression by the Mad-Max complex. [provided by RefSeq, Jul 2008]...show less
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Q96ST3 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Mutational cancer driver genes Disease related genes Human disease related genes Other congenital disorders Chromosomal abnormalities Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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GO:0000118[histone deacetylase complex] GO:0000122[negative regulation of transcription by RNA polymerase II] GO:0000785[chromatin] GO:0002218[activation of innate immune response] GO:0002230[positive regulation of defense response to virus by host] GO:0003713[transcription coactivator activity] GO:0003714[transcription corepressor activity] GO:0005515[protein binding] GO:0005634[nucleus] GO:0005654[nucleoplasm] GO:0005730[nucleolus] GO:0006355[regulation of DNA-templated transcription] GO:0006476[protein deacetylation] GO:0016575[histone deacetylation] GO:0016580[Sin3 complex] GO:0021895[cerebral cortex neuron differentiation] GO:0030336[negative regulation of cell migration] GO:0030512[negative regulation of transforming growth factor beta receptor signaling pathway] GO:0030516[regulation of axon extension] GO:0031453[positive regulation of heterochromatin formation] GO:0042754[negative regulation of circadian rhythm] GO:0045666[positive regulation of neuron differentiation] GO:0045892[negative regulation of DNA-templated transcription] GO:0045944[positive regulation of transcription by RNA polymerase II] GO:0048511[rhythmic process] GO:0061629[RNA polymerase II-specific DNA-binding transcription factor binding] GO:0140416[transcription regulator inhibitor activity] GO:1900181[negative regulation of protein localization to nucleus] GO:1901675[negative regulation of histone H3-K27 acetylation] GO:1902455[negative regulation of stem cell population maintenance] GO:1902459[positive regulation of stem cell population maintenance] GO:2000678[negative regulation of transcription regulatory region DNA binding]
Q96ST3 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Mutational cancer driver genes Disease related genes Human disease related genes Other congenital disorders Chromosomal abnormalities Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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GO:0000118[histone deacetylase complex] GO:0000122[negative regulation of transcription by RNA polymerase II] GO:0000776[kinetochore] GO:0000785[chromatin] GO:0001701[in utero embryonic development] GO:0002218[activation of innate immune response] GO:0002230[positive regulation of defense response to virus by host] GO:0002244[hematopoietic progenitor cell differentiation] GO:0003677[DNA binding] GO:0003682[chromatin binding] GO:0003713[transcription coactivator activity] GO:0003714[transcription corepressor activity] GO:0003723[RNA binding] GO:0005515[protein binding] GO:0005634[nucleus] GO:0005654[nucleoplasm] GO:0005667[transcription regulator complex] GO:0005730[nucleolus] GO:0006260[DNA replication] GO:0006355[regulation of DNA-templated transcription] GO:0006476[protein deacetylation] GO:0007568[aging] GO:0008104[protein localization] GO:0010243[response to organonitrogen compound] GO:0010817[regulation of hormone levels] GO:0010971[positive regulation of G2/M transition of mitotic cell cycle] GO:0016575[histone deacetylation] GO:0016580[Sin3 complex] GO:0017053[transcription repressor complex] GO:0021895[cerebral cortex neuron differentiation] GO:0030336[negative regulation of cell migration] GO:0030512[negative regulation of transforming growth factor beta receptor signaling pathway] GO:0030516[regulation of axon extension] GO:0031453[positive regulation of heterochromatin formation] GO:0032991[protein-containing complex] GO:0042754[negative regulation of circadian rhythm] GO:0043066[negative regulation of apoptotic process] GO:0043619[regulation of transcription from RNA polymerase II promoter in response to oxidative stress] GO:0044877[protein-containing complex binding] GO:0045666[positive regulation of neuron differentiation] GO:0045892[negative regulation of DNA-templated transcription] GO:0045944[positive regulation of transcription by RNA polymerase II] GO:0048511[rhythmic process] GO:0051595[response to methylglyoxal] GO:0061629[RNA polymerase II-specific DNA-binding transcription factor binding] GO:0071333[cellular response to glucose stimulus] GO:0140416[transcription regulator inhibitor activity] GO:1900181[negative regulation of protein localization to nucleus] GO:1901675[negative regulation of histone H3-K27 acetylation] GO:1902455[negative regulation of stem cell population maintenance] GO:1902459[positive regulation of stem cell population maintenance] GO:1903351[cellular response to dopamine] GO:2000678[negative regulation of transcription regulatory region DNA binding]
Q96ST3 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Mutational cancer driver genes Disease related genes Human disease related genes Other congenital disorders Chromosomal abnormalities Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Ezkurdia et al 2014)
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GO:0000118[histone deacetylase complex] GO:0000122[negative regulation of transcription by RNA polymerase II] GO:0000785[chromatin] GO:0002218[activation of innate immune response] GO:0002230[positive regulation of defense response to virus by host] GO:0003713[transcription coactivator activity] GO:0003714[transcription corepressor activity] GO:0005515[protein binding] GO:0005634[nucleus] GO:0005654[nucleoplasm] GO:0005730[nucleolus] GO:0006355[regulation of DNA-templated transcription] GO:0006476[protein deacetylation] GO:0016575[histone deacetylation] GO:0016580[Sin3 complex] GO:0021895[cerebral cortex neuron differentiation] GO:0030336[negative regulation of cell migration] GO:0030512[negative regulation of transforming growth factor beta receptor signaling pathway] GO:0030516[regulation of axon extension] GO:0031453[positive regulation of heterochromatin formation] GO:0042754[negative regulation of circadian rhythm] GO:0045666[positive regulation of neuron differentiation] GO:0045892[negative regulation of DNA-templated transcription] GO:0045944[positive regulation of transcription by RNA polymerase II] GO:0048511[rhythmic process] GO:0061629[RNA polymerase II-specific DNA-binding transcription factor binding] GO:0140416[transcription regulator inhibitor activity] GO:1900181[negative regulation of protein localization to nucleus] GO:1901675[negative regulation of histone H3-K27 acetylation] GO:1902455[negative regulation of stem cell population maintenance] GO:1902459[positive regulation of stem cell population maintenance] GO:2000678[negative regulation of transcription regulatory region DNA binding]
H3BNZ3 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
H3BP90 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
H3BMA2 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
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GO:0003714[transcription corepressor activity] GO:0006355[regulation of DNA-templated transcription] GO:0016580[Sin3 complex]
H3BQL7 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
H3BT34 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
H3BQ76 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
H3BNA0 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
H3BQ88 [Direct mapping] Paired amphipathic helix protein Sin3a
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Metabolic proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
Metabolic proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714[transcription corepressor activity] GO:0006355[regulation of DNA-templated transcription] GO:0016580[Sin3 complex]
Metabolic proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutational cancer driver genes Human disease related genes Other congenital disorders Chromosomal abnormalities Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003714[transcription corepressor activity] GO:0006355[regulation of DNA-templated transcription] GO:0016580[Sin3 complex]