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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC33A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC33A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
0.9
743
Tumor
0.8
863
Tumor
0.8
545
Tumor
0.7
921
Tumor
0.7
983
Tumor
0.7
685
Tumor
0.6
357
Tumor
0.6
815
Tumor
0.6
393
Tumor
0.6
911
Tumor
0.6
123
Tumor
0.6
261
Tumor
0.6
861
Tumor
0.6
227
Tumor
0.5
981
Tumor
0.5
363
Tumor
0.5
741
Tumor
0.5
745
Tumor
0.5
112
Tumor
0.5
937
Tumor
0.5
231
Tumor
0.5
195
Tumor
0.5
443
Tumor
0.5
351
Tumor
0.5
715
Tumor
0.5
857
Tumor
0.4
147
Tumor
0.4
223
Tumor
0.4
533
Tumor
0.4
145
Tumor
0.4
431
Tumor
0.4
865
Tumor
0.4
915
Tumor
0.4
963
Tumor
0.4
1041
Tumor
0.4
267
Tumor
0.4
647
Tumor
0.4
697
Tumor
0.4
567
Tumor
0.4
957
Tumor
0.4
851
Tumor
0.4
135
Tumor
0.4
523
Tumor
0.4
1015
Tumor
0.3
473
Tumor
0.3
527
Tumor
0.3
435
Tumor
0.3
713
Tumor
0.3
445
Tumor
0.3
463
Tumor
0.3
411
Tumor
0.3
877
Tumor
0.3
537
Tumor
0.3
967
Tumor
0.3
724
Normal
0.3
137
Tumor
0.3
341
Tumor
0.3
615
Tumor
0.3
353
Tumor
0.3
191
Tumor
0.3
331
Tumor
0.3
777
Tumor
0.3
171
Tumor
0.3
721
Tumor
0.2
1021
Tumor
0.2
367
Tumor
0.2
571
Tumor
0.2
1013
Tumor
0.2
483
Tumor
0.2
161
Tumor
0.2
663
Tumor
0.2
451
Tumor
0.2
823
Tumor
0.2
1045
Tumor
0.2
277
Tumor
0.2
327
Tumor
0.2
477
Tumor
0.2
285
Tumor
0.2
955
Tumor
0.2
1027
Tumor
0.2
446
Normal
0.2
554
Normal
0.2
923
Tumor
0.2
617
Tumor
0.1
467
Tumor
0.1
553
Tumor
0.1
557
Tumor
0.1
481
Tumor
0.1
493
Tumor
0.1
421
Tumor
0.1
131
Tumor
0.1
395
Tumor
0.1
465
Tumor
0.1
221
Tumor
0.1
868
Normal
0.1
913
Tumor
0.1
515
Tumor
0.1
535
Tumor
0.1
944
Normal
0.1
727
Tumor
0.1
392
Normal
0.1
361
Tumor
0.1
568
Normal
0.1
968
Normal
0.1
232
Normal
0.1
462
Normal
0.1
258
Normal
0.0
497
Tumor
0.0
867
Tumor
0.0
977
Tumor
0.0
413
Tumor
0.0
526
Normal
0.0
722
Normal
0.0
636
Normal
0.0
665
Tumor
0.0
943
Tumor
0.0
525
Tumor
0.0
218
Normal
0.0
162
Normal
0.0
1016
Normal
0.0
618
Normal
0.0
1014
Normal
0.0
358
Normal
0.0
187
Tumor
0.0
385
Tumor
0.0
415
Tumor
0.0
925
Tumor
0.0
816
Normal
0.0
455
Tumor
0.0
368
Normal
0.0
534
Normal
0.0
314
Normal
0.0
873
Tumor
0.0
737
Tumor
0.0
466
Normal
0.0
862
Normal
0.0
376
Normal
0.0
286
Normal
0.0
866
Normal
0.0
433
Tumor
0.0
824
Normal
0.0
817
Tumor
0.0
1043
Tumor
0.0
464
Normal
0.0
546
Normal
0.0
111
Normal
0.0
1026
Normal
0.0
132
Normal
0.0
426
Normal
0.0
926
Normal
0.0
864
Normal
0.0
965
Tumor
-0.1
564
Normal
-0.1
217
Tumor
-0.1
1044
Normal
-0.1
698
Normal
-0.1
951
Tumor
-0.1
141
Tumor
-0.1
412
Normal
-0.1
172
Normal
-0.1
1042
Normal
-0.1
436
Normal
-0.1
278
Normal
-0.1
696
Normal
-0.1
355
Tumor
-0.1
952
Normal
-0.1
257
Tumor
-0.1
448
Normal
-0.1
686
Normal
-0.1
212
Normal
-0.1
432
Normal
-0.1
136
Normal
-0.1
452
Normal
-0.1
127
Tumor
-0.1
456
Normal
-0.1
428
Normal
-0.1
422
Normal
-0.1
958
Normal
-0.1
786
Normal
-0.1
924
Normal
-0.1
785
Tumor
-0.1
113
Tumor
-0.1
978
Normal
-0.1
148
Normal
-0.1
396
Normal
-0.1
332
Normal
-0.1
343
Tumor
-0.1
518
Normal
-0.1
474
Normal
-0.1
883
Tumor
-0.1
298
Normal
-0.1
778
Normal
-0.1
328
Normal
-0.1
912
Normal
-0.1
878
Normal
-0.1
423
Tumor
-0.1
516
Normal
-0.1
513
Tumor
-0.1
881
Tumor
-0.1
388
Normal
-0.1
383
Tumor
-0.1
616
Normal
-0.1
142
Normal
-0.1
1046
Normal
-0.1
982
Normal
-0.1
964
Normal
-0.1
362
Normal
-0.1
914
Normal
-0.1
356
Normal
-0.1
563
Tumor
-0.1
882
Normal
-0.1
574
Normal
-0.1
312
Normal
-0.1
813
Tumor
-0.1
488
Normal
-0.1
628
Normal
-0.1
271
Tumor
-0.2
716
Normal
-0.2
1022
Normal
-0.2
714
Normal
-0.2
728
Normal
-0.2
186
Normal
-0.2
572
Normal
-0.2
185
Tumor
-0.2
424
Normal
-0.2
984
Normal
-0.2
746
Normal
-0.2
364
Normal
-0.2
648
Normal
-0.2
354
Normal
-0.2
662
Normal
-0.2
558
Normal
-0.2
484
Normal
-0.2
482
Normal
-0.2
472
Normal
-0.2
284
Normal
-0.2
444
Normal
-0.2
695
Tumor
-0.2
938
Normal
-0.2
313
Tumor
-0.2
138
Normal
-0.2
498
Normal
-0.2
272
Normal
-0.2
125
Tumor
-0.2
434
Normal
-0.2
884
Normal
-0.2
524
Normal
-0.2
514
Normal
-0.2
352
Normal
-0.2
342
Normal
-0.2
641
Tumor
-0.2
664
Normal
-0.2
494
Normal
-0.2
738
Normal
-0.2
966
Normal
-0.2
262
Normal
-0.2
956
Normal
-0.2
414
Normal
-0.2
858
Normal
-0.2
228
Normal
-0.2
427
Tumor
-0.2
222
Normal
-0.2
922
Normal
-0.2
478
Normal
-0.2
742
Normal
-0.2
976
Normal
-0.2
391
Tumor
-0.2
224
Normal
-0.2
214
Normal
-0.3
975
Tumor
-0.3
311
Tumor
-0.3
384
Normal
-0.3
528
Normal
-0.3
642
Normal
-0.3
366
Normal
-0.3
447
Tumor
-0.3
461
Tumor
-0.3
124
Normal
-0.3
297
Tumor
-0.3
146
Normal
-0.3
918
Normal
-0.3
917
Tumor
-0.3
755
Tumor
-0.3
536
Normal
-0.3
128
Normal
-0.3
517
Tumor
-0.3
1032
Normal
-0.3
394
Normal
-0.3
666
Normal
-0.3
492
Normal
-0.3
756
Normal
-0.3
491
Tumor
-0.3
916
Normal
-0.3
723
Tumor
-0.3
386
Normal
-0.3
954
Normal
-0.3
425
Tumor
-0.3
487
Tumor
-0.3
814
Normal
-0.3
852
Normal
-0.3
211
Tumor
-0.3
818
Normal
-0.3
1031
Tumor
-0.4
213
Tumor
-0.4
874
Normal
-0.4
953
Tumor
-0.4
387
Tumor
-0.4
196
Normal
-0.4
1028
Normal
-0.4
416
Normal
-0.4
188
Normal
-0.4
114
Normal
-0.4
538
Normal
-0.4
635
Tumor
-0.4
672
Normal
-0.4
471
Tumor
-0.4
468
Normal
-0.4
126
Normal
-0.4
268
Normal
-0.4
744
Normal
-0.5
627
Tumor
-0.5
365
Tumor
-0.5
283
Tumor
-0.5
192
Normal
-0.5
375
Tumor
-0.5
344
Normal
-0.5
573
Tumor
-0.6
661
Tumor
-0.6
671
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
