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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC50A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
267.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
227.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
223.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
219.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
186.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
186.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
173.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
168.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
160.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
159.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
157.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
155.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
153.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
152.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
151.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
150.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
147.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
143.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
139.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
138.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
136.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
135.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
133.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
133.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
132.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
131.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
128.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
124.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
123.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
123.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
119.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
119.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
119.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
117.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
116.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
115.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
115.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
114.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
114.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
114.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
112.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
112.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
111.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
110.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
110.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
107.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
107.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
106.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
103.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
102.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
101.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
99.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
98.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
98.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
96.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
95.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
95.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
94.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
94.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
93.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
92.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
92.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
91.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
90.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
90.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
90.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
89.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
88.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
88.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
88.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
87.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
86.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
86.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
85.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
84.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
84.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
83.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
83.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
82.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
82.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
81.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
81.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
80.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
80.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
78.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
76.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
75.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
74.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
73.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
71.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
71.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
71.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
71.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
70.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
67.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
67.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
67.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
66.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
66.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
66.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
66.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
65.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
65.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
65.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
65.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
64.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
64.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
64.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
63.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
63.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
62.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
62.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
61.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
61.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
61.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
59.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
59.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
59.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
59.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
59.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
58.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
58.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
58.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
56.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
56.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
56.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
55.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
55.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
55.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
54.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
54.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
53.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
52.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
52.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
51.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
50.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
50.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
49.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
49.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
48.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
48.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
48.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
48.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
46.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
46.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
45.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
44.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
44.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
44.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
42.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
41.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
41.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
39.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
39.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
37.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
37.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
35.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC50A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
61.7
Number of samples
231
Samples
Sample
Description
TPM
DO45253
0 years, male, NA, stage:2, alive, 870 days
305.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
233.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
223.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
184.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
180.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
170.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
163.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
159.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
156.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
154.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
153.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
147.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
147.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
146.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
144.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
143.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
143.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
135.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
130.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
129.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
128.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
123.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
123.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
121.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
120.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
117.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
113.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
112.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
104.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
103.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
99.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
99.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
96.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
95.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
94.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
93.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
91.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
91.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
90.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
90.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
89.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
88.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
87.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
86.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
85.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
84.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
82.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
81.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
81.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
80.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
80.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
78.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
78.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
78.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
77.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
77.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
76.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
74.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
74.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
74.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
73.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
73.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
72.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
72.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
71.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
69.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
68.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
68.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
68.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
67.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
66.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
66.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
66.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
66.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
66.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
65.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
65.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
65.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
64.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
61.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
60.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
59.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
59.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
59.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
59.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
58.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
57.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
57.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
56.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
55.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
55.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
55.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
54.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
53.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
53.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
53.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
52.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
51.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
50.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
49.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
48.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
48.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
48.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
48.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
47.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
46.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
46.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
46.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
33.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
1.7
435
Tumor
1.5
383
Tumor
1.4
883
Tumor
1.3
443
Tumor
1.2
427
Tumor
1.1
1021
Tumor
1.1
161
Tumor
1.1
357
Tumor
1.0
185
Tumor
1.0
425
Tumor
0.9
727
Tumor
0.9
257
Tumor
0.8
123
Tumor
0.8
387
Tumor
0.8
663
Tumor
0.8
477
Tumor
0.8
635
Tumor
0.8
615
Tumor
0.7
567
Tumor
0.7
525
Tumor
0.7
431
Tumor
0.7
271
Tumor
0.7
463
Tumor
0.7
125
Tumor
0.6
267
Tumor
0.6
671
Tumor
0.6
741
Tumor
0.6
391
Tumor
0.6
1027
Tumor
0.6
313
Tumor
0.6
385
Tumor
0.6
343
Tumor
0.5
573
Tumor
0.5
213
Tumor
0.5
227
Tumor
0.5
141
Tumor
0.5
341
Tumor
0.5
171
Tumor
0.5
813
Tumor
0.5
571
Tumor
0.5
647
Tumor
0.4
395
Tumor
0.4
375
Tumor
0.4
817
Tumor
0.4
445
Tumor
0.4
127
Tumor
0.3
187
Tumor
0.3
426
Normal
0.3
361
Tumor
0.3
713
Tumor
0.3
951
Tumor
0.3
983
Tumor
0.3
353
Tumor
0.3
465
Tumor
0.3
367
Tumor
0.3
413
Tumor
0.3
147
Tumor
0.3
877
Tumor
0.2
436
Normal
0.2
221
Tumor
0.2
277
Tumor
0.2
217
Tumor
0.2
487
Tumor
0.2
384
Normal
0.2
231
Tumor
0.2
354
Normal
0.2
283
Tumor
0.2
921
Tumor
0.2
867
Tumor
0.2
471
Tumor
0.2
697
Tumor
0.2
563
Tumor
0.2
342
Normal
0.2
925
Tumor
0.2
366
Normal
0.2
358
Normal
0.2
365
Tumor
0.2
393
Tumor
0.1
394
Normal
0.1
446
Normal
0.1
432
Normal
0.1
444
Normal
0.1
724
Normal
0.1
743
Tumor
0.1
135
Tumor
0.1
172
Normal
0.1
186
Normal
0.1
352
Normal
0.1
421
Tumor
0.1
533
Tumor
0.1
162
Normal
0.1
145
Tumor
0.0
497
Tumor
0.0
913
Tumor
0.0
434
Normal
0.0
368
Normal
0.0
376
Normal
0.0
331
Tumor
0.0
388
Normal
0.0
112
Tumor
0.0
642
Normal
0.0
461
Tumor
0.0
423
Tumor
0.0
433
Tumor
0.0
386
Normal
0.0
428
Normal
0.0
1015
Tumor
0.0
424
Normal
0.0
351
Tumor
-0.1
517
Tumor
-0.1
232
Normal
-0.1
953
Tumor
-0.1
881
Tumor
-0.1
396
Normal
-0.1
1013
Tumor
-0.1
865
Tumor
-0.1
721
Tumor
-0.1
661
Tumor
-0.1
188
Normal
-0.1
745
Tumor
-0.1
861
Tumor
-0.1
362
Normal
-0.1
977
Tumor
-0.1
392
Normal
-0.1
195
Tumor
-0.1
513
Tumor
-0.1
685
Tumor
-0.1
414
Normal
-0.1
515
Tumor
-0.1
297
Tumor
-0.1
148
Normal
-0.1
268
Normal
-0.1
814
Normal
-0.1
665
Tumor
-0.1
223
Tumor
-0.2
344
Normal
-0.2
911
Tumor
-0.2
411
Tumor
-0.2
873
Tumor
-0.2
777
Tumor
-0.2
422
Normal
-0.2
311
Tumor
-0.2
1031
Tumor
-0.2
191
Tumor
-0.2
1043
Tumor
-0.2
1016
Normal
-0.2
1028
Normal
-0.2
695
Tumor
-0.2
272
Normal
-0.2
286
Normal
-0.2
262
Normal
-0.2
975
Tumor
-0.2
553
Tumor
-0.2
914
Normal
-0.2
863
Tumor
-0.2
981
Tumor
-0.2
451
Tumor
-0.2
823
Tumor
-0.2
1032
Normal
-0.2
464
Normal
-0.2
1022
Normal
-0.2
984
Normal
-0.2
978
Normal
-0.2
224
Normal
-0.2
535
Tumor
-0.3
222
Normal
-0.3
455
Tumor
-0.3
467
Tumor
-0.3
923
Tumor
-0.3
917
Tumor
-0.3
546
Normal
-0.3
192
Normal
-0.3
755
Tumor
-0.3
857
Tumor
-0.3
851
Tumor
-0.3
196
Normal
-0.3
627
Tumor
-0.3
132
Normal
-0.3
137
Tumor
-0.3
258
Normal
-0.3
1014
Normal
-0.3
815
Tumor
-0.3
452
Normal
-0.3
564
Normal
-0.3
284
Normal
-0.3
298
Normal
-0.3
568
Normal
-0.3
468
Normal
-0.3
526
Normal
-0.3
228
Normal
-0.3
523
Tumor
-0.3
498
Normal
-0.3
982
Normal
-0.3
138
Normal
-0.3
491
Tumor
-0.3
574
Normal
-0.3
722
Normal
-0.4
214
Normal
-0.4
113
Tumor
-0.4
327
Tumor
-0.4
456
Normal
-0.4
356
Normal
-0.4
537
Tumor
-0.4
874
Normal
-0.4
328
Normal
-0.4
557
Tumor
-0.4
114
Normal
-0.4
416
Normal
-0.4
538
Normal
-0.4
146
Normal
-0.4
824
Normal
-0.4
1045
Tumor
-0.4
142
Normal
-0.4
864
Normal
-0.4
466
Normal
-0.4
672
Normal
-0.4
924
Normal
-0.4
954
Normal
-0.4
528
Normal
-0.4
662
Normal
-0.4
868
Normal
-0.4
742
Normal
-0.4
862
Normal
-0.4
1025
Tumor
-0.5
278
Normal
-0.5
527
Tumor
-0.5
534
Normal
-0.5
128
Normal
-0.5
473
Tumor
-0.5
956
Normal
-0.5
922
Normal
-0.5
136
Normal
-0.5
124
Normal
-0.5
636
Normal
-0.5
818
Normal
-0.5
628
Normal
-0.5
514
Normal
-0.5
572
Normal
-0.5
111
Normal
-0.5
938
Normal
-0.5
482
Normal
-0.5
516
Normal
-0.5
816
Normal
-0.5
488
Normal
-0.5
493
Tumor
-0.5
618
Normal
-0.5
616
Normal
-0.5
364
Normal
-0.5
852
Normal
-0.5
355
Tumor
-0.6
483
Tumor
-0.6
916
Normal
-0.6
1042
Normal
-0.6
218
Normal
-0.6
738
Normal
-0.6
944
Normal
-0.6
261
Tumor
-0.6
858
Normal
-0.6
1026
Normal
-0.6
1041
Tumor
-0.6
462
Normal
-0.6
472
Normal
-0.6
648
Normal
-0.6
967
Tumor
-0.6
943
Tumor
-0.6
126
Normal
-0.6
312
Normal
-0.6
478
Normal
-0.6
494
Normal
-0.6
915
Tumor
-0.6
882
Normal
-0.6
866
Normal
-0.6
212
Normal
-0.6
937
Tumor
-0.6
518
Normal
-0.6
912
Normal
-0.6
714
Normal
-0.6
314
Normal
-0.6
558
Normal
-0.6
952
Normal
-0.6
554
Normal
-0.6
968
Normal
-0.6
955
Tumor
-0.6
918
Normal
-0.6
686
Normal
-0.6
716
Normal
-0.7
884
Normal
-0.7
715
Tumor
-0.7
696
Normal
-0.7
412
Normal
-0.7
474
Normal
-0.7
963
Tumor
-0.7
926
Normal
-0.7
332
Normal
-0.7
363
Tumor
-0.7
957
Tumor
-0.7
524
Normal
-0.7
664
Normal
-0.7
878
Normal
-0.7
728
Normal
-0.7
448
Normal
-0.7
698
Normal
-0.8
545
Tumor
-0.8
737
Tumor
-0.8
481
Tumor
-0.8
965
Tumor
-0.8
723
Tumor
-0.8
285
Tumor
-0.8
447
Tumor
-0.8
484
Normal
-0.9
966
Normal
-0.9
964
Normal
-0.9
492
Normal
-0.9
976
Normal
-0.9
415
Tumor
-0.9
666
Normal
-0.9
617
Tumor
-0.9
786
Normal
-0.9
131
Tumor
-1.0
1044
Normal
-1.0
1046
Normal
-1.0
778
Normal
-1.1
744
Normal
-1.1
211
Tumor
-1.1
756
Normal
-1.1
536
Normal
-1.2
746
Normal
-1.2
785
Tumor
-1.3
958
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
