We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRELID1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
140.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
421.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
380.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
296.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
292.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
290.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
287.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
285.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
281.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
280.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
279.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
274.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
265.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
259.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
259.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
257.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
257.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
256.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
256.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
255.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
255.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
246.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
239.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
236.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
235.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
233.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
232.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
229.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
229.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
227.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
225.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
222.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
221.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
220.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
214.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
213.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
213.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
213.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
208.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
206.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
205.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
205.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
204.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
202.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
202.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
201.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
200.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
199.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
198.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
198.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
197.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
195.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
195.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
194.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
194.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
194.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
193.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
193.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
192.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
192.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
191.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
190.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
190.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
189.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
187.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
187.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
186.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
185.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
185.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
184.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
184.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
184.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
183.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
181.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
181.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
180.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
180.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
179.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
178.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
178.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
177.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
177.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
177.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
177.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
176.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
176.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
176.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
175.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
174.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
173.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
173.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
173.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
172.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
171.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
171.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
171.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
170.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
170.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
169.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
169.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
169.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
167.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
167.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
167.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
167.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
165.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
165.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
164.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
164.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
163.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
163.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
162.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
162.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
162.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
159.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
158.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
158.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
158.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
157.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
157.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
157.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
156.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
155.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
155.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
154.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
154.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
153.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
153.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
152.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
152.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
151.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
151.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
151.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
151.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
149.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
149.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
149.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
148.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
148.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
147.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
147.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
146.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
145.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
145.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
145.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
145.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
144.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
144.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
144.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
143.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
143.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
142.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
142.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
141.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
140.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
140.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
139.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
138.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
138.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
138.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
136.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
136.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
136.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
135.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
135.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
134.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
133.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
133.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
133.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
132.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
132.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
132.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
131.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
131.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
130.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
130.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
129.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
129.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
129.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
129.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
129.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
128.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
128.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
128.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
127.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
127.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
127.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
126.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
126.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
124.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
123.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
123.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
123.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
122.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
121.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
121.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
121.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
121.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
120.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
120.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
120.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
119.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
119.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
119.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
118.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
118.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
118.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
118.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
117.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
117.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
116.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
116.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
115.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
114.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
114.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
114.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
114.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
114.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
114.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
114.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
114.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
114.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
113.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
113.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
112.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
112.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
112.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
112.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
112.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
111.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
111.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
111.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
111.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
110.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
110.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
110.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
109.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
109.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
109.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
109.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
109.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
109.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
108.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
108.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
108.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
108.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
108.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
108.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
107.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
107.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
107.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
106.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
106.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
105.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
105.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
104.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
103.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
103.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
103.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
103.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
103.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
103.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
103.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
103.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
102.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
102.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
102.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
102.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
102.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
101.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
101.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
100.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
99.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
99.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
99.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
99.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
98.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
98.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
98.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
98.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
97.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
97.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
97.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
97.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
97.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
96.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
96.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
95.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
95.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
95.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
95.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
95.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
95.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
94.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
94.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
94.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
94.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
94.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
93.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
93.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
93.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
92.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
91.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
91.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
90.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
89.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
89.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
87.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
87.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
87.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
87.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
87.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
87.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
86.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
86.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
86.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
85.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
84.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
84.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
84.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
83.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
83.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
83.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
82.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
82.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
80.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
80.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
80.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
79.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
79.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
79.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
78.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
78.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
78.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
78.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
78.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
77.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
77.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
77.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
77.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
77.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
76.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
75.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
75.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
75.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
74.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
74.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
74.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
74.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
72.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
72.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
72.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
70.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
70.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
68.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
68.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
67.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
66.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
63.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
60.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
57.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRELID1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
100.2
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
427.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
347.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
326.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
293.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
254.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
252.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
214.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
212.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
212.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
201.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
201.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
196.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
196.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
185.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
182.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
182.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
181.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
180.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
167.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
166.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
162.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
161.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
160.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
159.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
154.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
154.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
152.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
151.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
150.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
148.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
146.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
146.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
146.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
145.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
142.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
141.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
139.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
138.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
137.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
137.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
137.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
136.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
136.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
135.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
135.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
134.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
132.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
130.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
128.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
128.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
128.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
127.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
126.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
126.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
125.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
125.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
123.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
122.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
120.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
120.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
119.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
118.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
117.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
116.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
115.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
115.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
115.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
115.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
114.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
114.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
114.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
114.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
114.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
114.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
112.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
112.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
111.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
111.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
111.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
110.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
110.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
108.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
108.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
107.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
106.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
106.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
105.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
105.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
104.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
103.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
103.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
101.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
100.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
98.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
98.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
98.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
97.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
97.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
95.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
95.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
91.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
91.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
91.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
91.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
91.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
90.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
89.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
89.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
89.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
88.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
87.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
87.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
87.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
86.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
86.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
86.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
85.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
84.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
84.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
84.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
83.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
83.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
83.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
83.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
82.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
81.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
81.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
80.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
80.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
80.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
80.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
79.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
79.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
79.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
78.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
78.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
77.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
77.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
77.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
76.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
76.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
76.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
76.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
75.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
74.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
74.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
74.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
74.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
73.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
73.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
72.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
72.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
71.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
70.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
70.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
70.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
70.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
70.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
69.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
69.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
68.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
68.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
67.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
66.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
66.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
65.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
65.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
65.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
65.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
64.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
64.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
64.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
64.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
64.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
63.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
63.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
62.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
62.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
61.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
60.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
60.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
58.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
58.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
58.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
58.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
57.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
57.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
56.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
56.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
56.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
55.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
55.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
54.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
50.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
50.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
50.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
49.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
49.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
49.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
48.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
47.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
47.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
47.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
46.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
41.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
41.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
33.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
2.4
537
Tumor
2.0
713
Tumor
1.2
953
Tumor
1.2
527
Tumor
1.2
573
Tumor
1.2
231
Tumor
1.0
227
Tumor
0.9
937
Tumor
0.9
913
Tumor
0.9
223
Tumor
0.8
743
Tumor
0.8
533
Tumor
0.8
755
Tumor
0.7
257
Tumor
0.7
695
Tumor
0.6
571
Tumor
0.6
883
Tumor
0.5
557
Tumor
0.5
272
Normal
0.5
258
Normal
0.5
497
Tumor
0.5
262
Normal
0.4
232
Normal
0.4
267
Tumor
0.4
524
Normal
0.4
1027
Tumor
0.4
967
Tumor
0.3
268
Normal
0.3
911
Tumor
0.3
1031
Tumor
0.3
528
Normal
0.3
271
Tumor
0.3
567
Tumor
0.3
724
Normal
0.3
534
Normal
0.3
1041
Tumor
0.3
483
Tumor
0.2
285
Tumor
0.2
546
Normal
0.2
954
Normal
0.2
1025
Tumor
0.2
955
Tumor
0.2
553
Tumor
0.2
1021
Tumor
0.2
938
Normal
0.2
525
Tumor
0.2
538
Normal
0.2
983
Tumor
0.2
964
Normal
0.2
572
Normal
0.1
877
Tumor
0.1
545
Tumor
0.1
518
Normal
0.1
558
Normal
0.1
526
Normal
0.1
944
Normal
0.1
884
Normal
0.1
956
Normal
0.1
564
Normal
0.1
515
Tumor
0.1
965
Tumor
0.1
455
Tumor
0.1
912
Normal
0.1
968
Normal
0.1
517
Tumor
0.1
952
Normal
0.1
976
Normal
0.1
261
Tumor
0.0
212
Normal
0.0
745
Tumor
0.0
1042
Normal
0.0
568
Normal
0.0
1032
Normal
N/A
1028
Normal
0.0
574
Normal
0.0
211
Tumor
0.0
451
Tumor
0.0
563
Tumor
0.0
958
Normal
0.0
696
Normal
0.0
1022
Normal
0.0
951
Tumor
-0.1
1016
Normal
-0.1
882
Normal
-0.1
914
Normal
-0.1
978
Normal
-0.1
513
Tumor
-0.1
721
Tumor
-0.1
881
Tumor
-0.1
714
Normal
-0.1
982
Normal
-0.1
286
Normal
-0.1
878
Normal
-0.1
975
Tumor
-0.1
685
Tumor
-0.1
514
Normal
-0.1
284
Normal
-0.2
1026
Normal
-0.2
283
Tumor
-0.2
785
Tumor
-0.2
737
Tumor
-0.2
777
Tumor
-0.2
554
Normal
-0.2
466
Normal
-0.2
224
Normal
-0.2
716
Normal
-0.2
963
Tumor
-0.2
487
Tumor
-0.2
516
Normal
-0.2
465
Tumor
-0.2
966
Normal
-0.3
1014
Normal
-0.3
957
Tumor
-0.3
715
Tumor
-0.3
741
Tumor
-0.3
1013
Tumor
-0.3
452
Normal
-0.3
943
Tumor
-0.3
984
Normal
-0.4
742
Normal
-0.4
738
Normal
-0.4
746
Normal
-0.5
493
Tumor
-0.5
464
Normal
-0.5
1015
Tumor
-0.5
463
Tumor
-0.5
468
Normal
-0.5
728
Normal
-0.5
722
Normal
-0.5
814
Normal
-0.5
727
Tumor
-0.5
686
Normal
-0.5
456
Normal
-0.6
977
Tumor
-0.6
786
Normal
-0.7
756
Normal
-0.7
467
Tumor
-0.7
228
Normal
-0.7
981
Tumor
-0.7
723
Tumor
-0.8
778
Normal
-0.8
813
Tumor
-0.8
494
Normal
-0.8
492
Normal
-0.9
744
Normal
-1.0
491
Tumor
-1.1
498
Normal
-1.1
484
Normal
-1.1
488
Normal
-1.2
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.