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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSMCE1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
183.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
164.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
164.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
152.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
129.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
120.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
115.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
103.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
103.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
101.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
97.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
97.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
97.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
97.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
96.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
96.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
95.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
93.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
92.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
91.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
91.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
91.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
90.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
90.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
89.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
89.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
89.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
87.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
86.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
85.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
83.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
83.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
83.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
82.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
82.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
81.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
81.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
80.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
80.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
80.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
80.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
80.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
79.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
79.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
79.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
79.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
78.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
78.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
78.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
77.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
77.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
76.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
76.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
76.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
75.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
74.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
74.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
74.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
74.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
74.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
73.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
73.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
73.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
71.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
71.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
71.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
71.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
70.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
70.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
70.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
70.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
70.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
70.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
70.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
69.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
69.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
69.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
68.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
68.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
67.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
66.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
66.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
66.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
66.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
66.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
65.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
65.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
65.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
65.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
64.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
64.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
64.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
63.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
63.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
63.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
63.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
62.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
62.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
61.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
61.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
61.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
61.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
61.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
61.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
61.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
61.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
61.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
60.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
60.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
60.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
59.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
59.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
59.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
58.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
58.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
58.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
57.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
57.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
57.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
57.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
57.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
56.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
56.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
56.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
56.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
56.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
56.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
55.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
55.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
55.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
55.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
53.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
53.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
53.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
53.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
52.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
52.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
52.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
52.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
52.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
52.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
51.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
51.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
51.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
51.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
50.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
50.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
49.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
49.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
49.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
49.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
49.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
49.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
49.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
48.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
48.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
48.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
48.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
48.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
47.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
47.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
47.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
46.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
46.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
45.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
45.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
45.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
45.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
45.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
44.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
43.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
43.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
43.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
42.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
42.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
42.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
41.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
39.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
38.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
37.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
36.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
34.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
31.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSMCE1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.2
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
128.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
105.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
98.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
96.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
91.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
90.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
90.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
87.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
81.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
80.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
78.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
77.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
76.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
72.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
69.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
64.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
61.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
60.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
59.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
58.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
55.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
54.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
52.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
52.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
51.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
50.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
47.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
46.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
46.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
45.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
45.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
42.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
42.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
41.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
40.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
39.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
39.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
38.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
37.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
34.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.8
967
Tumor
0.8
641
Tumor
0.8
1031
Tumor
0.7
975
Tumor
0.7
917
Tumor
0.7
925
Tumor
0.6
661
Tumor
0.6
695
Tumor
0.6
443
Tumor
0.6
921
Tumor
0.6
487
Tumor
0.5
331
Tumor
0.5
465
Tumor
0.5
647
Tumor
0.5
445
Tumor
0.5
435
Tumor
0.5
635
Tumor
0.5
277
Tumor
0.5
497
Tumor
0.5
926
Normal
0.4
391
Tumor
0.4
446
Normal
0.4
221
Tumor
0.4
444
Normal
0.4
523
Tumor
0.4
922
Normal
0.4
357
Tumor
0.4
213
Tumor
0.4
517
Tumor
0.4
313
Tumor
0.4
538
Normal
0.4
924
Normal
0.4
881
Tumor
0.4
1021
Tumor
0.3
554
Normal
0.3
432
Normal
0.3
964
Normal
0.3
817
Tumor
0.3
981
Tumor
0.3
455
Tumor
0.3
484
Normal
0.3
212
Normal
0.3
534
Normal
0.3
1015
Tumor
0.3
743
Tumor
0.3
411
Tumor
0.3
171
Tumor
0.3
918
Normal
0.3
131
Tumor
0.3
425
Tumor
0.3
727
Tumor
0.3
515
Tumor
0.3
553
Tumor
0.3
127
Tumor
0.3
963
Tumor
0.3
271
Tumor
0.3
923
Tumor
0.3
916
Normal
0.3
433
Tumor
0.3
286
Normal
0.3
113
Tumor
0.3
724
Normal
0.3
1045
Tumor
0.3
716
Normal
0.3
976
Normal
0.2
715
Tumor
0.2
224
Normal
0.2
297
Tumor
0.2
187
Tumor
0.2
814
Normal
0.2
185
Tumor
0.2
161
Tumor
0.2
528
Normal
0.2
958
Normal
0.2
912
Normal
0.2
546
Normal
0.2
365
Tumor
0.2
813
Tumor
0.2
463
Tumor
0.2
493
Tumor
0.2
483
Tumor
0.2
1046
Normal
0.2
126
Normal
0.2
671
Tumor
0.2
957
Tumor
0.2
341
Tumor
0.2
516
Normal
0.2
883
Tumor
0.2
535
Tumor
0.2
284
Normal
0.2
492
Normal
0.2
123
Tumor
0.2
1014
Normal
0.2
858
Normal
0.2
737
Tumor
0.2
857
Tumor
0.2
128
Normal
0.2
915
Tumor
0.2
467
Tumor
0.2
968
Normal
0.2
723
Tumor
0.2
387
Tumor
0.2
434
Normal
0.2
1016
Normal
0.1
298
Normal
0.1
1043
Tumor
0.1
696
Normal
0.1
697
Tumor
0.1
312
Normal
0.1
741
Tumor
0.1
742
Normal
0.1
498
Normal
0.1
461
Tumor
0.1
818
Normal
0.1
494
Normal
0.1
142
Normal
0.1
1013
Tumor
0.1
141
Tumor
0.1
685
Tumor
0.1
228
Normal
0.1
361
Tumor
0.1
383
Tumor
0.1
436
Normal
0.1
146
Normal
0.1
188
Normal
0.1
488
Normal
0.1
385
Tumor
0.1
823
Tumor
0.1
571
Tumor
0.1
352
Normal
0.1
342
Normal
0.1
481
Tumor
0.1
456
Normal
0.1
714
Normal
0.1
314
Normal
0.1
413
Tumor
0.1
536
Normal
0.1
431
Tumor
0.1
884
Normal
0.1
937
Tumor
0.1
738
Normal
0.1
464
Normal
0.1
343
Tumor
0.1
984
Normal
0.1
111
Normal
0.1
114
Normal
0.1
514
Normal
0.1
367
Tumor
0.1
977
Tumor
0.1
982
Normal
0.1
328
Normal
0.1
473
Tumor
0.1
172
Normal
0.1
966
Normal
0.1
533
Tumor
0.1
332
Normal
0.1
824
Normal
0.0
882
Normal
0.0
526
Normal
0.0
1041
Tumor
0.0
777
Tumor
0.0
477
Tumor
0.0
412
Normal
0.0
867
Tumor
0.0
311
Tumor
0.0
648
Normal
0.0
278
Normal
0.0
863
Tumor
0.0
1027
Tumor
0.0
471
Tumor
0.0
354
Normal
0.0
482
Normal
0.0
196
Normal
0.0
358
Normal
0.0
136
Normal
0.0
525
Tumor
0.0
491
Tumor
0.0
355
Tumor
0.0
616
Normal
0.0
452
Normal
0.0
911
Tumor
0.0
913
Tumor
0.0
721
Tumor
0.0
351
Tumor
0.0
728
Normal
0.0
186
Normal
0.0
662
Normal
0.0
451
Tumor
0.0
744
Normal
0.0
914
Normal
0.0
462
Normal
0.0
386
Normal
0.0
666
Normal
0.0
873
Tumor
0.0
447
Tumor
0.0
448
Normal
0.0
852
Normal
0.0
466
Normal
0.0
636
Normal
0.0
132
Normal
0.0
756
Normal
0.0
672
Normal
-0.1
557
Tumor
-0.1
388
Normal
-0.1
214
Normal
-0.1
563
Tumor
-0.1
713
Tumor
-0.1
686
Normal
-0.1
211
Tumor
-0.1
191
Tumor
-0.1
568
Normal
-0.1
524
Normal
-0.1
222
Normal
-0.1
192
Normal
-0.1
1042
Normal
-0.1
376
Normal
-0.1
663
Tumor
-0.1
472
Normal
-0.1
137
Tumor
-0.1
392
Normal
-0.1
545
Tumor
-0.1
427
Tumor
-0.1
474
Normal
-0.1
938
Normal
-0.1
1028
Normal
-0.1
978
Normal
-0.1
148
Normal
-0.1
864
Normal
-0.1
162
Normal
-0.1
698
Normal
-0.1
395
Tumor
-0.1
746
Normal
-0.1
664
Normal
-0.1
344
Normal
-0.1
218
Normal
-0.1
1026
Normal
-0.1
195
Tumor
-0.1
138
Normal
-0.1
356
Normal
-0.1
364
Normal
-0.1
572
Normal
-0.1
815
Tumor
-0.1
135
Tumor
-0.1
478
Normal
-0.1
268
Normal
-0.1
468
Normal
-0.1
416
Normal
-0.1
665
Tumor
-0.1
394
Normal
-0.2
1032
Normal
-0.2
513
Tumor
-0.2
558
Normal
-0.2
618
Normal
-0.2
527
Tumor
-0.2
722
Normal
-0.2
414
Normal
-0.2
862
Normal
-0.2
217
Tumor
-0.2
574
Normal
-0.2
124
Normal
-0.2
537
Tumor
-0.2
384
Normal
-0.2
954
Normal
-0.2
227
Tumor
-0.2
778
Normal
-0.2
396
Normal
-0.2
283
Tumor
-0.2
627
Tumor
-0.2
267
Tumor
-0.2
112
Tumor
-0.2
642
Normal
-0.2
232
Normal
-0.2
145
Tumor
-0.2
426
Normal
-0.2
786
Normal
-0.2
567
Tumor
-0.2
415
Tumor
-0.2
755
Tumor
-0.2
573
Tumor
-0.2
363
Tumor
-0.2
816
Normal
-0.2
362
Normal
-0.2
422
Normal
-0.2
223
Tumor
-0.2
615
Tumor
-0.2
953
Tumor
-0.2
874
Normal
-0.2
943
Tumor
-0.2
564
Normal
-0.2
423
Tumor
-0.2
261
Tumor
-0.3
878
Normal
-0.3
428
Normal
-0.3
868
Normal
-0.3
272
Normal
-0.3
628
Normal
-0.3
353
Tumor
-0.3
518
Normal
-0.3
851
Tumor
-0.3
861
Tumor
-0.3
231
Tumor
-0.3
866
Normal
-0.3
368
Normal
-0.3
258
Normal
-0.3
1044
Normal
-0.3
877
Tumor
-0.3
424
Normal
-0.3
956
Normal
-0.3
951
Tumor
-0.3
617
Tumor
-0.3
1022
Normal
-0.3
944
Normal
-0.4
785
Tumor
-0.4
125
Tumor
-0.4
983
Tumor
-0.4
1025
Tumor
-0.4
366
Normal
-0.4
421
Tumor
-0.4
147
Tumor
-0.4
375
Tumor
-0.4
262
Normal
-0.4
327
Tumor
-0.4
952
Normal
-0.5
865
Tumor
-0.5
393
Tumor
-0.6
257
Tumor
-0.6
285
Tumor
-0.7
745
Tumor
-0.7
955
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
