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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XPO6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
92.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
89.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
80.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
77.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
75.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
75.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
72.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
69.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
68.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
65.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
64.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
63.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
62.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
61.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
58.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
58.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
57.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
55.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
54.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
52.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
50.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
50.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
49.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
49.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
48.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
47.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
44.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
44.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
38.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
36.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
35.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
35.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
33.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XPO6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.1
641
Tumor
1.1
817
Tumor
1.1
661
Tumor
0.9
367
Tumor
0.7
685
Tumor
0.6
1021
Tumor
0.6
427
Tumor
0.5
395
Tumor
0.5
343
Tumor
0.5
525
Tumor
0.5
943
Tumor
0.5
814
Normal
0.5
313
Tumor
0.5
137
Tumor
0.5
267
Tumor
0.5
217
Tumor
0.4
351
Tumor
0.4
573
Tumor
0.4
465
Tumor
0.4
231
Tumor
0.4
211
Tumor
0.4
127
Tumor
0.4
413
Tumor
0.4
297
Tumor
0.4
391
Tumor
0.4
123
Tumor
0.4
813
Tumor
0.4
917
Tumor
0.4
1013
Tumor
0.4
452
Normal
0.4
545
Tumor
0.3
125
Tumor
0.3
411
Tumor
0.3
497
Tumor
0.3
262
Normal
0.3
331
Tumor
0.3
482
Normal
0.3
332
Normal
0.3
865
Tumor
0.3
314
Normal
0.3
715
Tumor
0.3
777
Tumor
0.3
663
Tumor
0.3
387
Tumor
0.3
635
Tumor
0.3
283
Tumor
0.3
456
Normal
0.3
1027
Tumor
0.3
861
Tumor
0.3
311
Tumor
0.3
1041
Tumor
0.3
967
Tumor
0.2
278
Normal
0.2
161
Tumor
0.2
464
Normal
0.2
473
Tumor
0.2
145
Tumor
0.2
171
Tumor
0.2
434
Normal
0.2
665
Tumor
0.2
213
Tumor
0.2
468
Normal
0.2
466
Normal
0.2
953
Tumor
0.2
533
Tumor
0.2
642
Normal
0.2
724
Normal
0.2
361
Tumor
0.2
132
Normal
0.2
523
Tumor
0.2
618
Normal
0.2
113
Tumor
0.2
628
Normal
0.2
446
Normal
0.2
451
Tumor
0.2
557
Tumor
0.2
721
Tumor
0.2
647
Tumor
0.2
435
Tumor
0.2
423
Tumor
0.2
1015
Tumor
0.2
1016
Normal
0.2
433
Tumor
0.2
671
Tumor
0.2
365
Tumor
0.2
357
Tumor
0.2
467
Tumor
0.2
713
Tumor
0.2
393
Tumor
0.2
818
Normal
0.1
925
Tumor
0.1
666
Normal
0.1
383
Tumor
0.1
141
Tumor
0.1
285
Tumor
0.1
672
Normal
0.1
563
Tumor
0.1
298
Normal
0.1
957
Tumor
0.1
858
Normal
0.1
135
Tumor
0.1
978
Normal
0.1
376
Normal
0.1
375
Tumor
0.1
461
Tumor
0.1
388
Normal
0.1
341
Tumor
0.1
138
Normal
0.1
963
Tumor
0.1
756
Normal
0.1
428
Normal
0.1
527
Tumor
0.1
384
Normal
0.1
636
Normal
0.1
913
Tumor
0.1
615
Tumor
0.1
354
Normal
0.1
368
Normal
0.1
136
Normal
0.1
491
Tumor
0.1
975
Tumor
0.1
392
Normal
0.1
396
Normal
0.1
386
Normal
0.1
977
Tumor
0.1
195
Tumor
0.1
187
Tumor
0.1
982
Normal
0.1
146
Normal
0.1
554
Normal
0.1
815
Tumor
0.1
358
Normal
0.0
366
Normal
0.0
192
Normal
0.0
352
Normal
0.0
422
Normal
0.0
277
Tumor
0.0
571
Tumor
0.0
257
Tumor
0.0
564
Normal
0.0
1031
Tumor
0.0
923
Tumor
0.0
528
Normal
0.0
443
Tumor
0.0
353
Tumor
0.0
185
Tumor
0.0
218
Normal
0.0
462
Normal
0.0
342
Normal
0.0
463
Tumor
0.0
1014
Normal
0.0
421
Tumor
0.0
937
Tumor
0.0
481
Tumor
0.0
662
Normal
0.0
444
Normal
0.0
627
Tumor
0.0
424
Normal
0.0
723
Tumor
0.0
553
Tumor
0.0
568
Normal
0.0
574
Normal
0.0
272
Normal
0.0
524
Normal
0.0
617
Tumor
0.0
487
Tumor
0.0
535
Tumor
0.0
513
Tumor
0.0
455
Tumor
0.0
664
Normal
0.0
976
Normal
0.0
983
Tumor
0.0
286
Normal
0.0
567
Tumor
0.0
816
Normal
0.0
851
Tumor
0.0
984
Normal
0.0
914
Normal
0.0
478
Normal
0.0
742
Normal
0.0
394
Normal
0.0
362
Normal
0.0
915
Tumor
0.0
312
Normal
0.0
966
Normal
0.0
128
Normal
0.0
222
Normal
0.0
223
Tumor
0.0
874
Normal
0.0
268
Normal
0.0
744
Normal
0.0
191
Tumor
0.0
616
Normal
0.0
778
Normal
0.0
126
Normal
0.0
824
Normal
0.0
445
Tumor
0.0
515
Tumor
0.0
414
Normal
0.0
877
Tumor
0.0
862
Normal
0.0
537
Tumor
-0.1
864
Normal
-0.1
112
Tumor
-0.1
344
Normal
-0.1
447
Tumor
-0.1
882
Normal
-0.1
981
Tumor
-0.1
884
Normal
-0.1
738
Normal
-0.1
477
Tumor
-0.1
857
Tumor
-0.1
526
Normal
-0.1
493
Tumor
-0.1
873
Tumor
-0.1
188
Normal
-0.1
546
Normal
-0.1
695
Tumor
-0.1
172
Normal
-0.1
196
Normal
-0.1
432
Normal
-0.1
142
Normal
-0.1
572
Normal
-0.1
852
Normal
-0.1
1026
Normal
-0.1
214
Normal
-0.1
534
Normal
-0.1
385
Tumor
-0.1
426
Normal
-0.1
866
Normal
-0.1
186
Normal
-0.1
648
Normal
-0.1
755
Tumor
-0.1
741
Tumor
-0.1
956
Normal
-0.1
938
Normal
-0.1
111
Normal
-0.1
472
Normal
-0.1
124
Normal
-0.1
786
Normal
-0.1
538
Normal
-0.1
221
Tumor
-0.1
558
Normal
-0.1
224
Normal
-0.1
1046
Normal
-0.1
271
Tumor
-0.1
964
Normal
-0.1
536
Normal
-0.1
1025
Tumor
-0.1
746
Normal
-0.1
258
Normal
-0.1
878
Normal
-0.1
284
Normal
-0.1
147
Tumor
-0.1
954
Normal
-0.1
514
Normal
-0.2
148
Normal
-0.2
518
Normal
-0.2
232
Normal
-0.2
1044
Normal
-0.2
162
Normal
-0.2
474
Normal
-0.2
228
Normal
-0.2
867
Tumor
-0.2
227
Tumor
-0.2
494
Normal
-0.2
114
Normal
-0.2
425
Tumor
-0.2
881
Tumor
-0.2
363
Tumor
-0.2
883
Tumor
-0.2
968
Normal
-0.2
952
Normal
-0.2
1028
Normal
-0.2
131
Tumor
-0.2
728
Normal
-0.2
498
Normal
-0.2
716
Normal
-0.2
356
Normal
-0.2
412
Normal
-0.2
492
Normal
-0.2
436
Normal
-0.2
212
Normal
-0.2
698
Normal
-0.2
696
Normal
-0.2
955
Tumor
-0.2
415
Tumor
-0.2
261
Tumor
-0.2
916
Normal
-0.2
1032
Normal
-0.2
743
Tumor
-0.2
944
Normal
-0.2
722
Normal
-0.2
483
Tumor
-0.2
517
Tumor
-0.2
1045
Tumor
-0.2
448
Normal
-0.2
1022
Normal
-0.2
355
Tumor
-0.3
686
Normal
-0.3
714
Normal
-0.3
488
Normal
-0.3
868
Normal
-0.3
785
Tumor
-0.3
926
Normal
-0.3
727
Tumor
-0.3
364
Normal
-0.3
911
Tumor
-0.3
1042
Normal
-0.3
921
Tumor
-0.3
823
Tumor
-0.3
484
Normal
-0.3
912
Normal
-0.3
416
Normal
-0.3
958
Normal
-0.3
1043
Tumor
-0.3
697
Tumor
-0.4
951
Tumor
-0.4
471
Tumor
-0.4
924
Normal
-0.4
328
Normal
-0.4
431
Tumor
-0.4
922
Normal
-0.4
516
Normal
-0.4
737
Tumor
-0.4
918
Normal
-0.4
745
Tumor
-0.4
863
Tumor
-0.5
327
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
